Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322F11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   0.73 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.3  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   3.0  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   5.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   6.8  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   9.0  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          25   9.0  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +2

Query: 242 INIWCSSAVWCCLFICKTIAKYIRVSNYSNSMF 340
           ++IW S+ ++CC+ + +   KY ++S+ S  +F
Sbjct: 486 VDIWSSAIIFCCMALRRFPWKYPKLSDNSFRLF 518


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 32   IVNSLEWNRKYFGFLCSATFIITIYFTMCNIVDIVMLSTF 151
            I NSL +  +   F CS+ FI   ++T+  +V ++ L+TF
Sbjct: 1010 INNSLLYFVRALLFYCSSIFISKEFYTVEQMVQVLSLATF 1049


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 62  YFGFLCSATFIITIYFTMCNIVDIVMLSTFLTTKLLNFVQR 184
           Y   L  AT +I    ++    DI+++STFLT + L   QR
Sbjct: 309 YLKSLGLATSLIAFNVSITEDADIIVVSTFLTEEGLTDYQR 349


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 201 IDFFYYL*TKFNSLVVKNVLSITMSTILH 115
           IDFFYY    FN L   +V+S+   T+L+
Sbjct: 269 IDFFYYYGFSFNYL--DSVVSVRSGTVLN 295


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 388 CTSTLSEISQLTKNITKHRITIITHSYILCDRFTDKQ 278
           CT  L ++  +TKN T H    I     +C+R  D +
Sbjct: 112 CTYILEQMQVVTKN-TSHLYDCIRSGVSICNRLLDME 147


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 154 NDQTVKFCSKVVKEIY 201
           N+  ++FCS V+KE+Y
Sbjct: 253 NNSQMRFCSTVLKELY 268


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 172 FCSKVVKEIYIFLFIGKMIFRVNDKYLVFKC 264
           F S+VV E ++ +FI K    +N++ ++F C
Sbjct: 75  FHSEVVSEEFMQIFIDKGNKALNNEEMIFAC 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,515
Number of Sequences: 5004
Number of extensions: 35809
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)