Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322F11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    28   4.7  
AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchang...    27   8.1  

>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 346 YFSLAAKSPKVYWYKLLYTSYVRFEAYFFVLIYNVIYF*TVTILFYFLEIKL*YNYSS 519
           YFSL A++ + +W   + +      + F+V+ Y V Y+ T   +  F+   L ++YSS
Sbjct: 534 YFSLCAENYRWWWRSFVISG----GSSFYVMAYAVFYYNTKLTIEGFVPTVLYFSYSS 587


>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 361 AKSPKVY-WYKLLYTSYVRFEAYFFVLIYNVIYF*TVTILFYFL 489
           A + KVY  ++ +Y S  R  A +F L YN ++   +T+ F+F+
Sbjct: 96  AMNLKVYNEFQSIYLSINRLVAIYFPLKYNFLFGIKLTLAFHFI 139


>AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchangers
           protein 10 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 62  YFGFLCSATFIITIYFTMCNIVDIVMLSTFLTTKLL 169
           Y GFL S  +I TI   + N++ ++ ++T ++ ++L
Sbjct: 494 YLGFLMSIAWIYTISSEIINVITMIGVATGVSQEIL 529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,339,852
Number of Sequences: 27780
Number of extensions: 199544
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)