Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    27   2.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   5.2  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    25   6.8  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   6.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.0  

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 401 TQDWLAAREIDFIRHEDWPSSSPD 330
           T ++L   +IDF+ H+D P +S D
Sbjct: 171 TPEFLEEHKIDFVAHDDIPYASDD 194


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 461  FNNRHWVFXQDSAPAHRAKSTQDW 390
            FNN +W   +++  AH A    +W
Sbjct: 1280 FNNEYWKIREEAGEAHLAGKEFEW 1303


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 347 ASLRAG*NRFHAPPASLVCSSLYELAP 427
           A L A   R HA P  +VCS +Y+L+P
Sbjct: 293 AQLVAQAARHHATPV-VVCSGIYKLSP 318


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 329 LNPLDYKIWQHLEEKACSKPHPNLESLK 246
           L   DY++W++LEEK   + HP   S +
Sbjct: 337 LKKYDYELWENLEEK---QIHPTYYSFR 361


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 438 EYPVPVIEHGMRNRYYKVRQDYILI 512
           E+  P+I HG +  +YK  + Y+++
Sbjct: 772 EFNSPIINHGEQEDFYKNFRTYVVL 796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,209
Number of Sequences: 5004
Number of extensions: 47385
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)