Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322F09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447           29   1.7  
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544           29   3.0  
08_02_1604 - 28163318-28163347,28164594-28164911                       28   4.0  
01_03_0233 + 14042548-14044950                                         28   4.0  
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24...    27   6.9  
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22...    27   6.9  
01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    27   6.9  
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369...    27   9.1  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    27   9.1  

>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
          Length = 420

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 463 CSITGTGYSXKIRRQLIERRAHKTGWRRVKSISSGT 356
           C I G G+  +   Q+  RR HK  WR VK  ++ T
Sbjct: 33  CEICGQGFQREQNLQM-HRRRHKVPWRLVKRPAAAT 67


>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
          Length = 1274

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
 Frame = -1

Query: 365  IRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSL---IKPAADIDMDLVRA 195
            + H D  +SS   N L+Y+        A + P P LE +  S    +    ++   L   
Sbjct: 1074 VEHHDTFTSSEHCNDLEYRSVPEQSSSAVNHPLPCLEMIHISFNDKMVELQNLPPSLTSL 1133

Query: 194  AIHDCPRRLKACIQNHGGHF 135
              H CP+      Q H   F
Sbjct: 1134 EFHSCPKLQSLSGQLHALKF 1153


>08_02_1604 - 28163318-28163347,28164594-28164911
          Length = 115

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 257 PNWDEALSTPFPPS 298
           PNWD+ L+ P PPS
Sbjct: 53  PNWDDKLTLPLPPS 66


>01_03_0233 + 14042548-14044950
          Length = 800

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -1

Query: 386 AAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEEKACSKPHPNLESLKTSLIKPAADIDMD 207
           AA E D  +     ++  DL P   + +      AC +P P L SL+ +     A+I+ +
Sbjct: 14  AASEADLAQLSTAIAAGEDLGPFVRRAF------ACGRPEPLLASLRAAARDREAEIE-E 66

Query: 206 LVRAAIHD 183
           L RA  HD
Sbjct: 67  LCRAHFHD 74


>12_01_0028 +
           242016-242467,242547-242918,243027-243182,245007-245089,
           245159-245222,245704-246001,246616-246726,247059-247100
          Length = 525

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 512 YQNIVLTNLVVPVPHTMFNNRHWVFXQDSAPAHRAK 405
           Y    L  L++P P    +   WVF   S PA+R K
Sbjct: 81  YNVSALPPLLLPPPTCDLSRGRWVFDNTSLPAYREK 116


>11_01_0029 +
           226459-226973,227053-227424,227533-227688,229513-229595,
           229665-229728,230209-230596
          Length = 525

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 512 YQNIVLTNLVVPVPHTMFNNRHWVFXQDSAPAHRAK 405
           Y    L  L++P P    +   WVF   S PA+R K
Sbjct: 102 YNVSALPPLLLPPPTCDLSRGRWVFDNTSLPAYREK 137


>01_06_1312 -
           36205549-36206649,36207558-36207883,36209083-36209198,
           36210472-36211577
          Length = 882

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 401 TQDWLAAREIDFIRHEDWPSSSPDLNPLDYK 309
           T+D+L    ID   H    SSSPD NP D +
Sbjct: 35  TEDFLRGDAIDDTTHVASDSSSPDDNPSDIR 65


>12_02_0785 +
           23135764-23135973,23136061-23136713,23136822-23136903,
           23137031-23137113,23137229-23137361,23137493-23137664,
           23137929-23138656
          Length = 686

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -1

Query: 434 QDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYK 309
           + S P+   K    WL A    F    DW  +    +PL Y+
Sbjct: 507 RSSLPSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQ 548


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 257 PNWDEAL-STPFPPSVAISCNLTDSNLDWRRASL 355
           PN D+   STP  P  ++SC+ T S L  R  SL
Sbjct: 137 PNDDDLCPSTPLSPMSSVSCSSTASTLVTRSCSL 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,357
Number of Sequences: 37544
Number of extensions: 322863
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)