Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|...    78   7e-16
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    29   0.56 
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   0.97 
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.2  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    27   2.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   3.0  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   3.0  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   3.0  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.9  
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    25   5.2  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   5.2  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    25   6.8  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   6.8  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 78.2 bits (184), Expect = 7e-16
 Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
 Frame = +1

Query: 46  RDEISRAASRIIDGVKENKISPENIDEELISQSLDLGEP---ELLVRTSGEVRLSDFMLW 216
           R EI+ +   I+   ++  I+PE+IDE++  ++L + +    +LL+RTSG  RLSDFMLW
Sbjct: 168 RHEIATSVQSIVKMAEDGTITPEDIDEDIFEKNLLIKDSLPLDLLIRTSGVERLSDFMLW 227

Query: 217 QI-SNTVLYFTDVLWPEFTIWNLLAAIIHFQ-RNAP 318
           Q   NT + F D  WP+F+IW     +I +Q +N P
Sbjct: 228 QCHKNTEIKFIDFYWPDFSIWKFFPMLIQYQLQNQP 263


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = +1

Query: 46  RDEISRAASRIIDGVKENKISPENIDEELISQSLD---LGEPELLVRTSGEVRLSDFMLW 216
           RD I      + D   +  IS   +  ELI + L    + EP+LL+  +  ++L  F  W
Sbjct: 162 RDAIIDLTRGLADLCTKKVISSTQVTLELIDKELKESVIPEPDLLIIFAPLLKLQGFPPW 221

Query: 217 QISNTVLYFTDVLWPEFTIWNLLAAIIHF 303
           Q+    ++   +L+          A++H+
Sbjct: 222 QLRLCEIFHDPILYTT-NYLTFFKALVHY 249


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/48 (20%), Positives = 29/48 (60%)
 Frame = +1

Query: 10  LEKNSKISWMKCRDEISRAASRIIDGVKENKISPENIDEELISQSLDL 153
           +E+++ +   + R+E  RAA+ + +   +++++  N D ++ +  LD+
Sbjct: 168 IERSASLREKQAREEAERAATALREAELKHRLAQANADVDVANSKLDI 215


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 124  EELISQSLDLGEPELLVRTSGEVRLSDFMLWQISNTVLYFTDVLWPEFT-IWNLLAAI 294
            EE   +  DLG+ ++LV+ +GE R  D  L Q+++ +++ T   W   +  W  + +I
Sbjct: 1428 EEWYGKFSDLGDGKVLVKLTGE-RSQDLKLIQVAD-LIFCTPSQWDSLSKRWRSMRSI 1483


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = +1

Query: 49  DEISRAASRIIDGVKENKIS-------PENIDEELISQSLDLGEPEL 168
           D  SRA  R +D +  NKI+       PEN  +ELI  SLD G   +
Sbjct: 2   DVNSRAKIRPLDQLVINKIAAGEIIERPENAIKELIENSLDAGSTSI 48


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 76  IIDGVKENK-ISPENID-EELISQSL-DLGEPELLVRTSGEVRLSDFMLWQISNTVLY 240
           I+D   +N  I P+  D +E  SQ   D+  PE L+R    + L +  L QI NT L+
Sbjct: 820 IMDMASKNVFIKPQEFDHDEYFSQEEEDIYRPENLIRNHQILGLMEGSLEQIRNTDLF 877


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 493 RLLYSR*IVEAFRLIYFIVLIRNIN*YILLVLELFFALNISKIP 362
           RLLYS    +  R  Y +++  NI   + L+LE     N+S +P
Sbjct: 95  RLLYSPGFSQVVRKQYRVMIFENIISSLCLLLEAMDNSNVSLLP 138


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +1

Query: 7   WLEKNSKISWMKCRDEISRAASRIIDGVKENKISPENIDEELISQSLDLGEPELLVRTSG 186
           +L    K+     R+EI      +   VKE  I  E ++E L +   +L E   L     
Sbjct: 599 FLSMKQKMQLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYH 658

Query: 187 EVRLSD 204
           E  L +
Sbjct: 659 EELLDN 664


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +1

Query: 1   WNWLEKNSKISWMKCRDEISRAASRIIDGVKENKISPENIDEELIS-QSLDLGEPELLVR 177
           +N+  KNS       R+E+ +AAS+I+    +     E  +E +++ ++ D  + E    
Sbjct: 83  FNFEPKNSVNKTETIREELDQAASKILIETLDLH-QKEGFEETIVTEEATDAVDLEAKGT 141

Query: 178 TSGEVRLSDF--MLWQISNTVLYFTDVLWP 261
           T GE  L +    L +++N V+   DV+ P
Sbjct: 142 THGENDLDEVPTELNELANEVVDVDDVVSP 171


>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 31  SWMKCRDEISRAASRIIDGVKENKISPENIDEELISQSLD-LGEP 162
           S  K  D+I     + +DG+++ K +      +LI Q+++ LGEP
Sbjct: 86  SKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEP 130


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 277 NLLAAIIHFQRNAPPIKAEDTNETAHEKKEFLKYLEQRRAQELTKY 414
           +L A     QRN      + TNET  + ++FL    Q R Q  TK+
Sbjct: 133 SLSALATQAQRNVSKTLPQSTNETIEKLRQFL----QTRYQPATKF 174


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 252 IVARIHD-LESIGGHYTFSEKCTSNKSGRHQ*NGARKEG 365
           +V ++ D L +  G++  ++KCT    G     GAR  G
Sbjct: 474 VVRKLTDRLRNAAGNFYINDKCTGAVVGEQPFGGARASG 512


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 91  KENKISPENIDEELISQSLDLGEPELLVRTSGEVRLSDF 207
           K+N +     D  LI+ SL   EP + + +SG+V  S++
Sbjct: 280 KDNGLVTVGFDNGLITFSLGRDEPSVTMDSSGKVVWSNY 318


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 16  KNSKISWMKCRDEISRAASRIIDGVKENKISPENIDEELISQS 144
           +N K+S    R +I++   +      E  ++PE +D   I QS
Sbjct: 591 ENYKVSPKGRRKKITKHTKKKNKHASETSVAPEKVDNSSIEQS 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,072
Number of Sequences: 5004
Number of extensions: 39872
Number of successful extensions: 115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)