Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322F08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908     71   6e-13
06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501           64   5e-11
07_03_1213 + 24921603-24921746,24921923-24922786                       63   1e-10
05_01_0603 - 5399295-5399748,5403745-5403909,5404007-5404069,540...    30   0.98 
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310...    27   6.9  
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    27   9.1  

>01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908
          Length = 295

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
 Frame = +1

Query: 46  RDEISRAASRIIDGVKENKISPENIDEELISQSLDLG-------EPELLVRTSGEVRLSD 204
           R +I +A  ++   V+   ++ E+IDE L +  L+          P+LL+RTSGE+RLS+
Sbjct: 191 RRDIVQACRKLAQKVQSKALAAEDIDEALFADELETSCAADEFPYPDLLIRTSGELRLSN 250

Query: 205 FMLWQISNTVLYFTDVLWPEFTIWNLLAAIIHFQ 306
           F+LWQ + + L+FT+ LWP+F   + L A+  FQ
Sbjct: 251 FLLWQSAYSELFFTNTLWPDFGEADYLEALCSFQ 284


>06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501
          Length = 316

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = +1

Query: 46  RDEISRA-ASRIIDGVKENKISPENIDEELISQSLDLGEPELLVRTSGEVRLSDFMLWQI 222
           RD + R  A  + +    + IS  ++D  + S      +P++++RTSGE RLS+F+LWQ 
Sbjct: 214 RDILQREDADSVANNGVYSDISVADLDRHMYSAGCP--DPDIVIRTSGETRLSNFLLWQT 271

Query: 223 SNTVLYFTDVLWPEFTIWNLLAAIIHFQRNAPPIK 327
           + + L   D LWPEF+  +L+ AI+ +QR  P I+
Sbjct: 272 TFSHLQNPDPLWPEFSFKHLVWAILQYQRVHPSIE 306


>07_03_1213 + 24921603-24921746,24921923-24922786
          Length = 335

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 35/94 (37%), Positives = 59/94 (62%)
 Frame = +1

Query: 46  RDEISRAASRIIDGVKENKISPENIDEELISQSLDLGEPELLVRTSGEVRLSDFMLWQIS 225
           R+++   A+   +GV  + IS  ++D  + S      +P++++RTSGE RLS+F+LWQ +
Sbjct: 238 REDVDSVAN---NGVHSD-ISVADLDHHMYSAGCP--DPDIVIRTSGETRLSNFLLWQTT 291

Query: 226 NTVLYFTDVLWPEFTIWNLLAAIIHFQRNAPPIK 327
            + L   D LWPEF+  +L+ AI+ +QR  P I+
Sbjct: 292 FSHLQNPDPLWPEFSFKHLVWAILQYQRVHPYIE 325


>05_01_0603 -
           5399295-5399748,5403745-5403909,5404007-5404069,
           5404320-5404720,5404861-5404930,5405151-5405266
          Length = 422

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
 Frame = +1

Query: 244 TDVLWPEFTIWNLLAAIIHFQ--------RNAPPIKAEDTNETAHEKKEFLKYLEQRRAQ 399
           T+  W E T  N  + ++H+         R    ++ ED     ++ + FL+Y+EQ  A 
Sbjct: 232 TEARWLELTANNCASGLLHYDSKARLRWCRGVAKVREEDPGAQPYDNRSFLQYVEQGTAP 291

Query: 400 EL 405
            L
Sbjct: 292 AL 293


>04_03_0813 -
           19929562-19929798,19930209-19930580,19930686-19931039,
           19931120-19931188,19931294-19931479,19932762-19932989,
           19933655-19934020,19934154-19934354,19934923-19935093,
           19935178-19935285,19935423-19935635,19936093-19936299,
           19936485-19936586,19936714-19936902,19937766-19937933
          Length = 1056

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 298 HFQRNAPPIKAEDTNETAHEKKEFLKYLEQ-RRAQELTKY 414
           H ++  PPI   D      + KEFL  L++ RR   + +Y
Sbjct: 560 HSKKECPPIHMTDLTRVPKKAKEFLHLLQRSRRHSAIVEY 599


>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 237 LFHGCIVA-RIHDLESIGGHYTFSEKCTSNKSGRHQ 341
           LF   IVA ++  LE+ G H +F  +C + ++ RH+
Sbjct: 668 LFQDNIVAVKVFSLETRGAHKSFMAECNALRNVRHR 703


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,691,766
Number of Sequences: 37544
Number of extensions: 215488
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)