Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322F07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 31 0.14
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 29 0.32
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 29 0.42
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 28 0.73
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 0.73
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 28 0.97
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 1.3
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 1.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 1.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 2.2
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 3.9
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 5.2
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 5.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 5.2
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 6.8
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 6.8
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 6.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.0
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 25 9.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 9.0
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 155 GHIAELERQRQAMIQTQREIEQRTIDSSTRSI-GLLRDSEQIGIATAEELSRQREQLQNT 331
G A ++ A++++Q + + SS ++I + + I A+ +S QRE +Q
Sbjct: 200 GDGANTRYEQMALLESQTDTYSQQRMSSIQNIESTITELGGIFSQLAQMVSEQRETVQRI 259
Query: 332 DRRLDEINTNLNYSQKHL 385
D D+I +N+ +Q+ +
Sbjct: 260 DMHTDDIVSNIGSAQREI 277
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.32
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 449 PSKSPATSNVRNAGTSSSRLD 511
PS SP+T+NV NA TSS+ ++
Sbjct: 214 PSSSPSTTNVSNASTSSAPIN 234
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 29.1 bits (62), Expect = 0.42
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 164 AELERQRQAMIQTQREIE--QRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDR 337
AE+ERQR A Q Q+ +E Q R +Q + T +L+ +QL T
Sbjct: 367 AEMERQRMAAQQHQQALEAIQMAQAEQQRIAQEQLAQQQFQMQTQGQLAELEQQLLATRG 426
Query: 338 RLDEINTNLN 367
+L++ N LN
Sbjct: 427 QLEQSNVLLN 436
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 28.3 bits (60), Expect = 0.73
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +2
Query: 257 LRDSEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYS---QKHLNGIKSVFYGLKNYI 427
+RDS+ I+ ELS+ E++ + R D++N N S Q+ L + G+ +
Sbjct: 267 VRDSDWELISLRNELSKLDEKILSLQRETDDVNIAQNKSKLIQRDLQKVLDYKLGILQSL 326
Query: 428 SGKSDQTPSKSPATSNVR 481
PS S ++++
Sbjct: 327 KNDGPNGPSASAIDNDLK 344
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 0.73
Identities = 18/85 (21%), Positives = 40/85 (47%)
Frame = +2
Query: 167 ELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDRRLD 346
+LE Q Q +++E + + +L S +T+ + SR + +L + + ++
Sbjct: 1276 QLESQLQTEKAAVKKLENSNEEYKRHNQEILL-SLNSSTSTSSDASRLKNELVSKENLIE 1334
Query: 347 EINTNLNYSQKHLNGIKSVFYGLKN 421
E+N + + + L +KS L+N
Sbjct: 1335 ELNQEIGHLKSELETVKSKSEDLEN 1359
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 27.9 bits (59), Expect = 0.97
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 167 ELER-QRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQREQLQNTDRRL 343
ELER Q Q M+Q Q E EQR I+ L ++ Q A A + +Q+ L++ D ++
Sbjct: 78 ELERLQHQKMLQIQAE-EQRKIELQQEQERLEQERRQKEEAIALQKQQQQRLLRSKDPKV 136
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 209 EIEQRTIDSSTRSIGLLRDSEQIGIATAEELSRQ----REQLQNTDRRLDE 349
E + ++ T+ + L D+E I AE+LSR+ E+L+ D+ L E
Sbjct: 54 ESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRE 104
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 137 ANKPYGGHIAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDS 268
AN+ HI ELE + + + + R + QR +T+ I LLR++
Sbjct: 358 ANEKDAAHITELETKLKELHEQNRRL-QRQKSLATQEIDLLREN 400
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 126 KHSKQISLMEVILQNWNVNAKL 191
K+SKQI ++E +QNW +A+L
Sbjct: 636 KNSKQIQVVERKIQNWRKSAQL 657
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 128 TQQANK--PYGGHIAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGIATAEEL 301
T+Q N+ P + ELER+ ++ ++ + D +++ RD+E++ + EL
Sbjct: 1237 TKQVNELSPKASKVPELERKITNLMHEYSQLGKTFEDEKRKALIASRDNEELR-SLKSEL 1295
Query: 302 SRQREQLQNTDRRLDEINT 358
+R+ + L+E+ T
Sbjct: 1296 ESKRKLEVEYQKVLEEVKT 1314
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 515 FHQACYYLYQHYVHSRSLDF*MVFDHFFRKYN 420
F QAC ++ +HSR+LD F H ++
Sbjct: 241 FEQACLDEFELGLHSRNLDLLRKFSHVLHDFS 272
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 211 FSLCLDHSLA-LTFQFCNMTSIRLICLLCL 125
+SL HSL LTFQ+ ++ S+ LLC+
Sbjct: 652 YSLIFSHSLLDLTFQYVDIASLLSQFLLCV 681
>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 281 YQFVQNHEAIRYFSLMNLLSVVRFLFVFGS*LGV 180
YQ+ ++ FSL+ LL + F FGS LG+
Sbjct: 49 YQWFKHQSVFLKFSLIVLLFSLMFSLTFGSLLGL 82
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/81 (19%), Positives = 32/81 (39%)
Frame = +2
Query: 245 SIGLLRDSEQIGIATAEELSRQREQLQNTDRRLDEINTNLNYSQKHLNGIKSVFYGLKNY 424
+IG L+DS EE+ +E + +L + + L+ ++ +K +N
Sbjct: 355 TIGSLKDSRTSNSQLEEEMVELKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNN 414
Query: 425 ISGKSDQTPSKSPATSNVRNA 487
+S K S R++
Sbjct: 415 LSSKDKMVKQVSSQLEEARSS 435
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 160 YCRTGTSTPSYDPNTK 207
Y RT + PSY+PNT+
Sbjct: 183 YIRTQKAQPSYNPNTR 198
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 246 VSDCFVILNKLVLQRPKSFPDNVNSYRTQTGD 341
VSD + LN+L+L+ +P N SY T D
Sbjct: 235 VSDQMLFLNQLLLEHNTKYPTNF-SYSTARDD 265
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 463 WTFRWCLITFSGNIILQTIKYRLY 392
W CL++F G+ L+ + Y +Y
Sbjct: 974 WILFQCLLSFGGDDFLKVVAYMVY 997
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 290 AEELSRQREQL--QNTDRRLDEINTNLNYSQKHLNGIKSVFYGLKNYISGKSDQTPSKSP 463
AE+ +Q + T R I++ L +K N K+ +KNY++ + +K
Sbjct: 1094 AEDTKNSYDQTSPEATQERNRTISSKLAEMEKQKNESKAALEQMKNYVTNIENNIRAKLL 1153
Query: 464 ATSNVRNAGTSSSRLDETL 520
++ +A S + +DE++
Sbjct: 1154 PSAANDDAWLSQNVVDESV 1172
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = -1
Query: 332 LCSVAVHVVGKALRPLQYQFV---QNHEAIRYFSLMNLLSVVRFLFVFGS*LGVDVPVLQ 162
LC+ AV + G AL + Y F+ + + L S++ FL + S +G ++P Q
Sbjct: 399 LCTSAVMIAGLALCAIAYHFLPADTTQNTNSGWQYVVLASIIIFLASYASGIG-NIPWQQ 457
Query: 161 YDLHKAYLLAVFEVFLT 111
+L + A+ F T
Sbjct: 458 AELFPMEVRALGAGFST 474
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/95 (20%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Frame = +2
Query: 161 IAELERQRQAMIQTQREIEQRTIDSSTRSIGLLRDSEQIGI---ATAEELSRQREQLQNT 331
I+E E + ++ I D + R I LL++ +Q + + + + ++E+ +
Sbjct: 337 ISEKENELSEILPKYNAIVSEADDLNKR-IMLLKNQKQSLLDKQSRTSQFTTKKERDEWI 395
Query: 332 DRRLDEINTNLNYSQKHLNGIKSVFYGLKNYISGK 436
+L +IN N+N ++++ + +K+ + ++N + K
Sbjct: 396 RNQLLQINRNINSTKENSDYLKTEYDEMENELKAK 430
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 291 PKSFPDNVNSYRTQTGDLM 347
P S D+ NSYR GDL+
Sbjct: 431 PSSSRDSFNSYRRDLGDLL 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,858
Number of Sequences: 5004
Number of extensions: 41525
Number of successful extensions: 159
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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