Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322F06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 0.87
AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical ... 30 1.2
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 28 3.5
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 28 3.5
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 28 3.5
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 28 3.5
Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical pr... 27 6.2
U80839-16|AAB37910.1| 149|Caenorhabditis elegans Hypothetical p... 27 6.2
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 8.1
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +3
Query: 72 SSFQQFQHQPNYLQQVQLINSLYAKXXXXXXXXXXXTVHNTEPIPIVNQEQVINPDGSYK 251
S +QF H+P ++++ + + YA T +++P P + Q I P +
Sbjct: 177 SVHEQFNHRPAHVEEEIPLENHYAPPPHQQIPDDLNTSFSSQPPPPIEQFGAIPPPNATI 236
Query: 252 WSYETGNGISAEEQGY 299
S+ T N S Q +
Sbjct: 237 PSFPTSNAASPPVQEF 252
>AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical
protein F14H12.3 protein.
Length = 257
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 517 VSCAGGGSVAKKSRAFCISAGTGGAVGKWAPC 422
V+C GGS+ + + C S TGG+V + PC
Sbjct: 153 VTCGSGGSITRSRQCSCGSGCTGGSV-EQEPC 183
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 223 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 384
RS +DHI ++ +F+L+ R +E +N+++ ++ + +LT +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 223 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 384
RS +DHI ++ +F+L+ R +E +N+++ ++ + +LT +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 223 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 384
RS +DHI ++ +F+L+ R +E +N+++ ++ + +LT +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 223 RSSIPMDHISGVTRQEMEFQLKSRAT*KTREYLNKRRRRHRANINILRLTVKLY 384
RS +DHI ++ +F+L+ R +E +N+++ ++ + +LT +Y
Sbjct: 725 RSRDKLDHIVRERSEKEQFELEKRRLLAEKEAMNRKKNHLLSSETLAKLTQPMY 778
>Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical
protein K07C10.1 protein.
Length = 851
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 278 NSISCLVTPLI*SIGIDDLFLI 213
NSI C+ LI IG+DD FL+
Sbjct: 320 NSIMCITPFLILGIGVDDAFLL 341
>Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical
protein F31F6.5 protein.
Length = 913
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -1
Query: 278 NSISCLVTPLI*SIGIDDLFLIN 210
N I+ ++ LI +IGIDD+FL+N
Sbjct: 331 NVINTIIPFLIIAIGIDDMFLMN 353
>U80839-16|AAB37910.1| 149|Caenorhabditis elegans Hypothetical
protein ZC204.1 protein.
Length = 149
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 24 YIIIVATLVSVGLADVSSFQQFQHQPNYLQQ 116
Y +++A ++ VGLA S + ++QP +QQ
Sbjct: 7 YFLVLAAILDVGLASYDSPRFLRNQPRSVQQ 37
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/66 (31%), Positives = 24/66 (36%)
Frame = -2
Query: 520 LVSCAGGGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGAVY*YWPC 341
L SC G + FCIS G G G CG + F T I P G PC
Sbjct: 2870 LASCCSGFTPQSSGGTFCISLGCLGGFG--GGCGSSCFFGLCLQTPIIQPIGC-----PC 2922
Query: 340 AVCASC 323
+ C
Sbjct: 2923 GIGFMC 2928
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/66 (31%), Positives = 24/66 (36%)
Frame = -2
Query: 520 LVSCAGGGSVAKKSRAFCISAGTGGAVGKWAPCGWNPFSSARYWTCIT*PSGAVY*YWPC 341
L SC G + FCIS G G G CG + F T I P G PC
Sbjct: 2870 LASCCSGFTPQSSGGTFCISLGCLGGFG--GGCGSSCFFGLCLQTPIIQPIGC-----PC 2922
Query: 340 AVCASC 323
+ C
Sbjct: 2923 GIGFMC 2928
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,610
Number of Sequences: 27780
Number of extensions: 238341
Number of successful extensions: 781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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