Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    27   1.7  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   5.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.0  

>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 235 KNAIQFRLHILSK*TKISLTCHRNRGFREFLEPFYRRV 122
           K  +Q   HI       +   + N GFR FL+ F+ RV
Sbjct: 235 KTRVQLEPHIYKNFLHSAKLVYANEGFRGFLDGFFLRV 272


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 372 LHGSTKPRVVRNCFNETRSHYKKKESNF*TKYLNYACMYFLTY*TKKMQYNFG 214
           LHG   P+   N + + RS + +  SN+    L Y   YF  +  K   ++ G
Sbjct: 110 LHGIPIPQKALNIYEKQRSLFSESISNY--LVLQYKLRYFPVFDLKIYDFHSG 160


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 HVKDIFVYLERICNRNCIAFFLSNRLK 254
           H++ + +   R+C  + +AFF+  R K
Sbjct: 604 HLRTLVIIYNRVCIESLLAFFVPPRTK 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,683
Number of Sequences: 5004
Number of extensions: 42989
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)