Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   3.0  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    26   3.9  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   3.9  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   9.0  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 110  QPVTITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 208
            +P  ITDD    P  N     L +PL W +I ++
Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 193 FPQRSKQTEWRKVQPWERELVIC 125
           F Q   QT+W  + P + + ++C
Sbjct: 190 FNQNKIQTDWSSIDPMDNDKIVC 212


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 156 FSHGNVNWSSVMVTGCTITSLSRAGKAV 73
           FSHG   WS +++ G   T  S   KAV
Sbjct: 155 FSHGRKPWSGILLYGPPGTGKSYLAKAV 182


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 381 KNWLANTSWSSSLASCDPWTKIKS 310
           + W+ N+S S  L  CD   KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 371 SQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPI 520
           S  +H+ SLP  SS   +     +  YLV+T   + +V  T      +P+
Sbjct: 121 SSRYHSVSLPCWSSGTGLAGLFGASSYLVMTTWFNFSVRSTLIISSFLPL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,011
Number of Sequences: 5004
Number of extensions: 31042
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)