Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E12f
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   1.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   2.7  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   4.7  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   6.3  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   6.3  

>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = -3

Query: 371 VSSQDALPPVNYYTFAIIILPNSTFLFFCL------MYISCTVPFEFFRSNFITLKSSIR 210
           VS+  ++ P+N + F   + P+     F +       Y SC        S F+ L  S+R
Sbjct: 499 VSNVTSIAPINAFLFQEYLFPDLQHFLFDMNSRTRATYASCLPILAKQASKFLNLAQSLR 558

Query: 209 NISIL 195
           N  IL
Sbjct: 559 NAGIL 563


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
 Frame = -3

Query: 353 LPPVNYYT---FAIIILPNSTFLFFCLMYISCTVPFEF----------FRSNFITLKSSI 213
           LPP +  T   F  I+  NST LF    Y S    F+F          F+S FI L++S 
Sbjct: 709 LPPTDSRTLVEFQTIVYTNSTLLFDGSFYFSQNGGFDFEPRQNYTYFDFKSEFIILQNSY 768

Query: 212 RNISILEVILFNLMMLVQSYIHIS 141
                 + I+  L+ L++  ++++
Sbjct: 769 SIYGPAKNIIKLLLELIEVILNVN 792


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 18  NVHFATTKSVARALGTRFILFL 83
           N+H A TK+V + L   F+LFL
Sbjct: 76  NIHGAHTKAVTKGLKIGFMLFL 97


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 333 YFCHNYFT*LNVFIF 289
           YFC  YFT LN F++
Sbjct: 116 YFCLQYFTNLNSFLY 130


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 188 ILFNLMMLVQSYIHISRDDLNLVKHCVSN 102
           IL +L +L++    +   DL  V+H +SN
Sbjct: 534 ILISLRLLIERISEVFSTDLTKVRHTISN 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,926
Number of Sequences: 5004
Number of extensions: 38645
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)