Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E12f
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0098 + 744582-745380,746107-746130,746500-747569                 29   2.7  
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    28   3.6  
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339...    27   8.3  
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    27   8.3  

>01_01_0098 + 744582-745380,746107-746130,746500-747569
          Length = 630

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 361 CELTPIDTAVPISVMKQFPFEGRGSPCPIKTLISLNIT 474
           C++T ID     +VMK  PF G  SPC +    S N++
Sbjct: 87  CKVTAIDYKK--AVMKIIPFGGSSSPCLLHKFNSTNLS 122


>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 423 RAGQPLSYKNSHLSQHYL 476
           RAG+ L Y+NSH +Q+YL
Sbjct: 268 RAGKALQYENSHGNQYYL 285


>12_02_0952 -
           24731799-24731901,24732169-24732231,24732941-24733980,
           24734094-24734339
          Length = 483

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 435 AAPPFERK-LLHDRNRHGSIYRCELTRRPTAGKLLYFCHN 319
           AAP   R+ LL + +RH   +RC+  R      + +FCH+
Sbjct: 94  AAPLLHRRILLPEVDRHFKPHRCQQQRVMVEQNVGFFCHS 133


>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 371 VSSQDALPPVNYYTFAIIILPNSTFLFFCLMYISCTV 261
           +++ D LP +NY+  +    P+S  LF   + I C V
Sbjct: 403 IANDDILPVLNYFKVSEGAEPHSATLFTAFICICCVV 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,588,014
Number of Sequences: 37544
Number of extensions: 208363
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)