Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E12f
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine rece...    28   4.3  
L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.      28   4.3  
Z81528-6|CAB04285.1|  633|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein39 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 278 YISCTVPFEFFRSNFITLKSSIRNISILEVILFNLMMLVQ 159
           Y  C +P EFF + F + K     + I  V+LF+L++L+Q
Sbjct: 171 YFLCPIP-EFFTTAF-SFKPVSNTMLITTVLLFSLVILIQ 208


>L11247-7|AAA28003.3|   91|Caenorhabditis elegans Hypothetical
           protein F09G8.9 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 347 PVNYYTFAIIILPNSTFLFFCLMYI 273
           P  Y+ F ++I+   TF+F CL+Y+
Sbjct: 38  PTKYFDFLLVII--MTFVFLCLVYL 60


>AY255665-1|AAQ96602.1|   91|Caenorhabditis elegans MiRP2 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 347 PVNYYTFAIIILPNSTFLFFCLMYI 273
           P  Y+ F ++I+   TF+F CL+Y+
Sbjct: 38  PTKYFDFLLVII--MTFVFLCLVYL 60


>Z81528-6|CAB04285.1|  633|Caenorhabditis elegans Hypothetical
           protein F35E2.7 protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -3

Query: 257 FEFFRSNFITLKSSIRNISILEVILFNLMMLVQSY 153
           FE F   ++TL S+  N+S+L +ILF L +L+  Y
Sbjct: 358 FETFEKWYLTLTST--NLSLLVIILFFLNILLIKY 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,736,173
Number of Sequences: 27780
Number of extensions: 214639
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)