Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E12f
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.19 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 425 PSNGNCFMTEIGTAVSIGVSSQDALPPVNYYTFAIIILPN-STFLFFCLM 279
           P+     +T + T  +    SQ +LPPV+Y     + + + S F+F  LM
Sbjct: 243 PARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLM 292


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 425 PSNGNCFMTEIGTAVSIGVSSQDALPPVNYYTFAIIILPNST-FLFFCLM 279
           P+     +T + T  +    SQ +LPPV+Y       +   T F+F  LM
Sbjct: 274 PARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSVCTVFVFMALM 323


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 409 QFPFEGRGSPCPIKTLI 459
           Q P  G+G+P  +KT I
Sbjct: 52  QLPTHGKGTPTVVKTNI 68


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 94  SIRHKNKIKRVPSAR 50
           +I+H N + R+PS R
Sbjct: 293 TIQHNNCLTRIPSTR 307


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 226 NVMKLDLKNSKGT 264
           N+ KLDLKN K T
Sbjct: 674 NMYKLDLKNMKYT 686


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 365 SQDALPPVNYYTFAIIILPNSTFLFFC 285
           ++D   P++   FA+  L +S +  FC
Sbjct: 594 TEDNFGPLSNVRFAVFALGSSAYPNFC 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,234
Number of Sequences: 438
Number of extensions: 2573
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)