Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    29   0.56 
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    27   1.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.2  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   6.8  
SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...    25   6.8  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   6.8  

>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 90  PLLRPSSSEDTLPSAAGDTTPRCLSDTRKPRATV*TP 200
           P+  P ++ D++ +A  DT+P+ L D  KP     +P
Sbjct: 300 PVAVPQNTSDSVGNAVTDTSPKTLFDPLKPNTGTPSP 336


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 399 WATWMACWRCSSSMPTILS 343
           W   + CW C +  PT+LS
Sbjct: 110 WMEMLDCWSCHTDYPTVLS 128


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 121 VSSDDDGRRSGVAVPDRRLGGHAADQSE 38
           +SSD D   + +AVPD+    HAA  S+
Sbjct: 714 ISSDGDASSNRMAVPDKSPFVHAAPNSK 741


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 403  ILGDLDGLLEMLQFDADDSVVGYAVDRS 320
            ++G + GL+ +LQ D    VVG++++++
Sbjct: 1130 LVGAIAGLIALLQKDLSPGVVGFSLNQA 1157


>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 418 FFSLVILGDLDGLLEMLQFDAD 353
           ++S ++ G + G LEMLQ D D
Sbjct: 129 WYSNILCGVIRGALEMLQMDVD 150


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 58  GRRASGRVQLLRSFVHRHRRTLFPQQRGTLHP 153
           G    GR+ LL + V +  + +F + RGT  P
Sbjct: 301 GMAHRGRLNLLHNIVRKPAQAIFSEFRGTQDP 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,923
Number of Sequences: 5004
Number of extensions: 24710
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)