Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0281 - 2067696-2068862                                           29   1.7  
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277...    29   3.0  
03_01_0095 + 759530-760123                                             28   4.0  
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    28   5.2  
06_01_0203 + 1555471-1555523,1555743-1555863,1556340-1556651,155...    27   6.9  
12_02_0480 + 19533214-19534045,19534178-19534222,19535217-19535362     27   9.1  
01_01_0350 + 2782189-2782650,2783778-2783798,2787172-2787690,278...    27   9.1  

>07_01_0281 - 2067696-2068862
          Length = 388

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 100 VHRHRRTLFPQQRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP 231
           +H HR   FP       P    T G+   Q +   A ++ DH P
Sbjct: 145 LHEHRAAPFPAPAPAFAPAPAGTMGSSSAQVQGDGAPDNHDHDP 188


>01_01_0349 +
           2776093-2776566,2778211-2778729,2778813-2779048,
           2779135-2779410,2779447-2779549,2780058-2780330
          Length = 626

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 136 AAEGRVSSDDDGRRSGVAVPDRRLGGHAAD 47
           A  G V++DD GR S V     R GGHAAD
Sbjct: 80  AGVGAVAADD-GRCSEVGAAALRAGGHAAD 108


>03_01_0095 + 759530-760123
          Length = 197

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 127 GRVSSDDDGRRSGVAVPDRRL---GGHAA 50
           GR    DDGR+ GVAVP R     GG AA
Sbjct: 86  GRGGGSDDGRQDGVAVPVRAAAAPGGGAA 114


>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 409 LVILGDLDGLLEMLQFDADD 350
           L+ LGD +GLL +L++D DD
Sbjct: 130 LMYLGDENGLLSVLKYDVDD 149


>06_01_0203 +
           1555471-1555523,1555743-1555863,1556340-1556651,
           1556806-1556910,1557009-1557466,1557886-1558187,
           1558300-1558481,1558893-1559083,1559248-1559381,
           1559487-1559725
          Length = 698

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 78  GTATPLLRPSSSEDTLPSAAGDTTPRCLSDTRKPRATV 191
           G A PLLR SS +D       D +     D+RKP  ++
Sbjct: 462 GLAQPLLRDSSKKDEDDDEEVDDSEEGTHDSRKPATSI 499


>12_02_0480 + 19533214-19534045,19534178-19534222,19535217-19535362
          Length = 340

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 364 FDADDSVVGYAVDRSGGPVVGRDAVSVT 281
           F+  DSVVG  +   GGP+   +   VT
Sbjct: 202 FEPTDSVVGLGLGMEGGPISAHEDADVT 229


>01_01_0350 +
           2782189-2782650,2783778-2783798,2787172-2787690,
           2787780-2788015,2788110-2788242,2788482-2788547,
           2789200-2789454
          Length = 563

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 136 AAEGRVSSDDDGRRSGVAVPDRRLGGHAAD 47
           A  G V++DD GR S V     R GGHA D
Sbjct: 76  AGVGAVATDD-GRCSEVGAAALRAGGHAVD 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,834
Number of Sequences: 37544
Number of extensions: 227336
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)