Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 146 YTPVPVGHQETEGYSVDPHLLEKIK 220
           Y P P+G   TE   V  HL E  K
Sbjct: 139 YKPTPLGAVATEKMFVARHLAETPK 163


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 133 AEGRVSSDDDGRRSGV 86
           AEGR+SSD+  ++S V
Sbjct: 248 AEGRLSSDNMSKKSPV 263


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 34  RPRFDRLRGRRASGRVQLLRSFVHRH-RRTLFPQQRGTLHPGACRT 168
           R +F+R RGR+   R Q L      H  R L  ++R  +    C T
Sbjct: 265 RSQFERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLT 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,600
Number of Sequences: 438
Number of extensions: 1635
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)