Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    28   0.73 
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   1.7  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   5.2  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   5.2  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   6.8  
SPAC11D3.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    25   9.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.0  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 432 GRFRFHDTRCLKQRVPRL*RILLNWLFHCVTSLTCTFRNDV 310
           GR++F + R LKQ  P +  ++LN++        C F N +
Sbjct: 556 GRWQFREHRILKQLWPYIIAMILNFIVRSSFIFYCIFPNHI 596


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 476 VRPSAN---ISRAHKYLRVAFVFMTPVASSSGFLVCD 375
           ++P +N   + + H++L++ F ++TP  S   F V D
Sbjct: 399 LKPDSNHFVLEKFHEFLKINFSYLTPTLSQKLFTVLD 435


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 343 NTMEQPVE*YSSQTRNPLLEATGVMKTKATRKYLWA 450
           NT   P E Y SQT + ++   G  +T A R  L A
Sbjct: 229 NTSYAPAEYYGSQTASKVIVTFGKSETVAARALLAA 264


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 293 GVQRKETSLRNVHVNDVTQWNNQLSNIRHKR 385
           G +  E S +N+ VND  +  ++LS +RH R
Sbjct: 216 GQKAVEESQKNILVNDFPKIWSKLSKVRHGR 246


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 91  PTVNRTTGPKVAALENRNLITGYV-PSLS 174
           PTVNRT  P  +A     + T Y  PS S
Sbjct: 495 PTVNRTVMPSTSATATTTVYTSYYSPSYS 523


>SPAC11D3.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 217 YGNYILYKKKSEIINLRKEHTRLSGCGFPMPP 122
           +  +IL+K       ++    +L+  GFP+PP
Sbjct: 41  FNRFILHKSPDIFTYIQYYQQKLNSYGFPLPP 72


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 178 INLRKEHTRLSGCGFP-MPPPSDQSFC*RLVVGANFCSS 65
           ++L+K   R+S  G   + P   Q F  +LV G NFC S
Sbjct: 89  MDLKKYMDRISETGATSLDPRLVQKFTYQLVNGVNFCHS 127


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 243 IKFENN---HTLHIVQFLNEEFNVRKRHYEMYMLMT*HNGTTS*VIFVTNEEPA 395
           +KFEN      +H        FN+    Y M +L   H+G +  ++ V  + P+
Sbjct: 261 LKFENEILYTAMHTTSIFKSVFNILGSFYTMRLLRNKHDGDSYELVPVFAKNPS 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,047
Number of Sequences: 5004
Number of extensions: 44939
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)