Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   1.7  
04_03_0845 - 20245836-20246046,20246137-20246219,20246330-202464...    27   6.9  

>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 308  ETSLRNVHVNDVTQWNNQLSNIRHKRGTRC 397
            ETSL+ +H +D +Q  +QL  +  +RG  C
Sbjct: 1838 ETSLQRMHPDDDSQTKHQLETVLSQRGETC 1867


>04_03_0845 -
           20245836-20246046,20246137-20246219,20246330-20246470,
           20246561-20247421
          Length = 431

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 506 CL*KAECDMRVRPSANISRAHKYLRVAFVFMTPVASSSGFLVCDE 372
           CL +   DMR+  + N+S A K     +V    V SSS FL+ DE
Sbjct: 243 CLERLLGDMRLTAAINVSGAPKLTAFGYV----VISSSNFLLFDE 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,780,730
Number of Sequences: 37544
Number of extensions: 302236
Number of successful extensions: 840
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)