Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322E06f
(324 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 64 4e-12
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz... 64 4e-12
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 49 2e-07
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 46 1e-06
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 44 6e-06
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 41 4e-05
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 36 0.001
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 30 0.100
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 2.1
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 2.1
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 3.7
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 4.9
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 23 8.6
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 23 8.6
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 64.5 bits (150), Expect = 4e-12
Identities = 33/69 (47%), Positives = 43/69 (62%)
Frame = +1
Query: 118 YDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVXLXDNEKLKQIDLDS 297
Y RQ+ + G ++ K++ + VLIIG GLG EIAKNV L GVKSV L D + + DL S
Sbjct: 20 YSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSS 79
Query: 298 QFLXPPDKI 324
Q+ D I
Sbjct: 80 QYFLTEDDI 88
>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
Rad31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 64.5 bits (150), Expect = 4e-12
Identities = 30/77 (38%), Positives = 51/77 (66%)
Frame = +1
Query: 73 VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 252
+GN+ + E YDRQIRLWG ++Q+ L+ ++VL+I S L EIAKN++L+G+ +
Sbjct: 1 MGNHNINAEEIAL--YDRQIRLWGFNAQQALKQSRVLLITASPLANEIAKNLVLSGIGKL 58
Query: 253 XLXDNEKLKQIDLDSQF 303
+ D+ + + D++ QF
Sbjct: 59 CVLDSMTVYEKDVEEQF 75
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 48.8 bits (111), Expect = 2e-07
Identities = 19/54 (35%), Positives = 38/54 (70%)
Frame = +1
Query: 145 LDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVXLXDNEKLKQIDLDSQFL 306
+++ + ++AKVL++G G+G E+ KN++++GVK V + D + + +L+ QFL
Sbjct: 17 VEALRNFKSAKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNRQFL 70
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 46.4 bits (105), Expect = 1e-06
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +1
Query: 97 SEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVXLXDN 267
+ A+ ++YDRQ+RLW + Q + + V ++ + +G E KN+IL G+ S + D+
Sbjct: 3 TSAKMQKYDRQVRLWKAEGQNAIEKSHVCLLYANTVGCEALKNLILPGIGSFAVVDD 59
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 44.0 bits (99), Expect = 6e-06
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 79 NNEVELSEAEAEQYDRQIRLW--GLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSV 252
+N +ELS E +Y RQ+ L GL Q L+ + VL+IG GLG + ++ G+ ++
Sbjct: 11 SNGLELSLDEYSRYGRQMLLSEIGLPGQLSLKRSSVLVIGAGGLGCPAMQYLVAAGIGTL 70
Query: 253 XLXDNEKLKQIDLDSQFLXPPDK 321
+ D + + + +L Q + K
Sbjct: 71 GIMDGDVVDKSNLHRQIIHSTSK 93
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 41.1 bits (92), Expect = 4e-05
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +1
Query: 148 DSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVXLXDNEKLKQIDLDSQFL 306
++ K ++K+LIIG GLG EI K++ L+G + + + D + + +L+ QFL
Sbjct: 37 ETLKSAFSSKILIIGAGGLGCEILKDLALSGFRDLSVIDMDTIDITNLNRQFL 89
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 36.3 bits (80), Expect = 0.001
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +1
Query: 112 EQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVXLXDNEKLKQIDL 291
EQ R +G D +RLR + V+++G G+G+ + + +GV+ + + D +++ L
Sbjct: 107 EQLARNYAFFGEDGMERLRNSFVIVVGCGGVGSWVINMLARSGVQKIRIVDFDQVSLSSL 166
Query: 292 D 294
+
Sbjct: 167 N 167
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 29.9 bits (64), Expect = 0.100
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 94 LSEAEAEQYDRQIRLWGLDSQ---KRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVXLXD 264
LSE+ A + + W L Q R++ +K L++G LG +A+N++ GV+ V D
Sbjct: 308 LSES-ASTLNLSLMRWRLVPQLDLDRIQNSKCLLLGAGTLGCGVARNLLSWGVRHVTFVD 366
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 2.1
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 199 GLGAEIAKN-VILTGVKSVXLXDNEKLKQIDLDSQFLXPPDKI 324
G G+ IA + + T VK + L + K+K + + PP K+
Sbjct: 113 GCGSAIASSSYVTTMVKGMTLEEASKIKNTQIAKELCLPPVKL 155
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 2.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 88 LHYFQPFFAMLLFIISIN 35
LH+F+P +L II++N
Sbjct: 116 LHFFEPLLVFILLIIALN 133
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 121 DRQIRLWGLDSQK 159
DRQI+LW L +QK
Sbjct: 381 DRQIKLWDLSTQK 393
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 24.2 bits (50), Expect = 4.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 82 NEVELSEAEAEQYDRQIRLWGLDSQKRL 165
++V S A E Y+R I G DS++++
Sbjct: 557 DDVNFSTASFEIYERSIPTHGADSERKI 584
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 15 VSKYRAKFIEIINNSIAKNGWK 80
VS +++KF + + N KNG+K
Sbjct: 6 VSDFKSKFDKELTNHFNKNGYK 27
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 23.4 bits (48), Expect = 8.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +2
Query: 47 YK*QHCKKWLEIMKSNFL 100
Y HC W+ I+ NF+
Sbjct: 309 YTFDHCNNWIAIVTRNFM 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,128
Number of Sequences: 5004
Number of extensions: 21084
Number of successful extensions: 59
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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