Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   204   8e-54
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   199   2e-52
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.32 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.7  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   2.2  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   3.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   3.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   5.2  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   9.0  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  204 bits (497), Expect = 8e-54
 Identities = 99/171 (57%), Positives = 128/171 (74%)
 Frame = +2

Query: 5   IPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTV 184
           IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS+K  A +RT 
Sbjct: 13  IPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTA 71

Query: 185 CSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVT 364
            S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVT
Sbjct: 72  YSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVT 131

Query: 365 VVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 517
           V  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE+
Sbjct: 132 VSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSER 182


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  199 bits (486), Expect = 2e-52
 Identities = 97/171 (56%), Positives = 126/171 (73%)
 Frame = +2

Query: 5   IPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTV 184
           IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS+K  A +R+V
Sbjct: 13  IPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSV 71

Query: 185 CSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVT 364
            S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVT
Sbjct: 72  YSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVT 131

Query: 365 VVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEK 517
           V  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE+
Sbjct: 132 VSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSER 182


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 2    KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 169
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 170  AVRTVCSHVENMIKGVT 220
             + T+CS + N++  VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 371 NSPKQKDELIIEGNSLEDVSSSAALIQQS 457
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 416 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKT 520
           + D+S+SA    + T + N+++ K  +GL+++ +T
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQT 112


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 184 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 38
           D P+G     GS  F+      V+H+N N+   ++  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/63 (22%), Positives = 35/63 (55%)
 Frame = +2

Query: 35   SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 214
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++ + 
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169

Query: 215  VTK 223
            ++K
Sbjct: 1170 LSK 1172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 178 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 56
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 168 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 58
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 362  TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 472
            +V+N    K EL +EG  L+ V ++  ++   T+  +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,943
Number of Sequences: 5004
Number of extensions: 44892
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)