Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322E02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   0.82 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   1.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 457 CTVGLLSVNTSAITKLMTFES 519
           C VG+L+V+  +I KL   ES
Sbjct: 11  CLVGILAVSEESINKLRKIES 31


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 518 LSKVINFVMALVLTERSP---TVQSVCLGQSGVARRV 417
           +S +   V A+ L E      TVQSVC+ + G A+++
Sbjct: 7   ISAICVCVSAMTLDELKSGLHTVQSVCMKEIGTAQQI 43


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 213 QQKTENLKTCFLNLKQSFPTVESANNLSLVE 305
           +Q+T++L   F  L++  PT+ S + LS ++
Sbjct: 263 RQRTQSLNEAFAALRKIIPTLPS-DKLSKIQ 292


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = -2

Query: 454  QSVLGRAVWQGESLRMNLISDSAMFAGVGVEHSSRDFTIQEVISSTFAHFSTRLKLLADS 275
            + +L   V    S++    SDSA+F  V       D T   +I          LK+L  S
Sbjct: 829  EEILANGVLSDLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVPYGLKVLDKS 888


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,457
Number of Sequences: 438
Number of extensions: 2746
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)