Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322D12f
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 56 8e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 1e-07
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 0.81
11_01_0626 - 5044385-5045416,5045463-5045471 27 2.5
01_06_1124 - 34679205-34680926,34681438-34682811 27 2.5
11_06_0707 + 26467214-26470309 27 3.3
11_06_0698 + 26385989-26389090 27 3.3
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720... 27 3.3
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 27 4.3
05_05_0221 - 23385626-23386702 27 4.3
03_02_1015 + 13225092-13225625 27 4.3
01_03_0163 + 13346586-13347809 27 4.3
01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405 26 5.7
01_06_0159 + 27089006-27089064,27089925-27090007,27090414-270905... 26 5.7
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 26 7.6
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 26 7.6
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 55.6 bits (128), Expect = 8e-09
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +3
Query: 60 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 239
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 240 RG---KLTGSVTNLITYRAP 290
RG +L VT L + P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.0 bits (119), Expect = 1e-07
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 93 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 263
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 264 TNLITYRAP 290
T L + P
Sbjct: 194 TPLTEFDHP 202
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 0.81
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 120 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 236
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>11_01_0626 - 5044385-5045416,5045463-5045471
Length = 346
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 2 IRHGQPRHHQG*VAHHGADLLQHDEETDPGGSGRVNPVLSHGGLLLDR 145
+R PRH +A A + + +D G G PV S GGL++ R
Sbjct: 24 VRAASPRHRDTAIA---AAVARFFSRSDGNGDGGYEPVTSRGGLVVLR 68
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 104 VNPVLSHGGLLLDRYGEPPRLREA 175
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -1
Query: 302 RRVGGGPVRDEVGYGACQLAPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPH 123
R+ GG P+ V A LA EQ NE R+L + S+ + RE + EV PH
Sbjct: 361 RKCGGLPLAIRVI--ATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPH 418
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -1
Query: 302 RRVGGGPVRDEVGYGACQLAPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPH 123
R+ GG P+ V A LA EQ NE R+L + S+ + RE + EV PH
Sbjct: 361 RKCGGLPLAIRVI--ATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPH 418
>06_03_0526 +
21771519-21771607,21771685-21771810,21771890-21772010,
21772123-21772851,21772954-21773349,21774594-21774665,
21774741-21774803,21775236-21775337
Length = 565
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 80 TDPGGSGRVNPVLSHGGLLLDRYGEPP 160
T G S +P HGGLL YGE P
Sbjct: 185 TSVGASAAADPSPVHGGLLAPVYGEFP 211
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 42 LTMEQTCYNMMRKQIQEEVAASIQYLAMGA-YFSIDTVNRPGFAKLF 179
L + Q N M ++Q ++ YL A +FS + +N+PGF ++
Sbjct: 124 LEIAQLGRNCMSARLQLTISKRSHYLVTFACWFSENVMNKPGFVDIY 170
>05_05_0221 - 23385626-23386702
Length = 358
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 95 SGRVNPVLSHGGLLLDRYGEPPRLREAILRCCD 193
S V L HG L +G L ILRCCD
Sbjct: 36 SAAVLEALLHGASLPPAHGGAHALAAEILRCCD 68
>03_02_1015 + 13225092-13225625
Length = 177
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 104 VNPVLSHGGLLLDRYG-EPPRL 166
V P +S+GG++LDR PPRL
Sbjct: 90 VRPFMSNGGMMLDRVPIAPPRL 111
>01_03_0163 + 13346586-13347809
Length = 407
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 50 GADLLQHDEETDPGGSGRVNPVLSHGGL 133
G DL Q E PGGS V + HG L
Sbjct: 163 GLDLQQQQEHVPPGGSDAVVVPVGHGVL 190
>01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405
Length = 699
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 104 VNPVLSHGGLLLDRYGEPPRLREAI 178
++P L H G ++D YG RL +A+
Sbjct: 460 IDPWLEHYGCMVDLYGRAGRLDDAV 484
>01_06_0159 +
27089006-27089064,27089925-27090007,27090414-27090588,
27091442-27091592,27091629-27091752,27092378-27092446,
27093197-27093291
Length = 251
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 98 GRVNPVLSHGGLL--LDRYGEPPRLREAILRCCD*RTRA 208
G V P S GG +R EP R R+ ++ CD R+R+
Sbjct: 69 GGVEPEPSSGGTAPGRERSSEPRRRRDVVVYGCDRRSRS 107
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 101 GHFLLDLFPHHVVASLLHGEPLI 33
G++++D F H + + H EPLI
Sbjct: 250 GYYVVDRFVGHGIGPIWHSEPLI 272
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 158 AVHRIDREVSPHG*VLD*RGHFLLDLFPHHVVASLLHGEPLI 33
++ +I R +S H + G ++D F H V + H EP+I
Sbjct: 275 SLKKIGRRISEHA---ERHGFGVVDRFVGHGVGRIFHSEPMI 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,691,148
Number of Sequences: 37544
Number of extensions: 202164
Number of successful extensions: 536
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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