Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322D12f
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    54   3e-08
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    46   5e-06
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       26   7.0  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    26   7.0  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    26   7.0  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    26   7.0  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    26   7.0  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    26   7.0  
AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical ...    25   9.2  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 33/78 (42%), Positives = 42/78 (53%)
 Frame = +3

Query: 72  MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 251
           + KQI  E+ AS  YL+M  YF  D V  P  AK F + + EEREHAT+L+    +RG  
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG-- 73

Query: 252 TGSVTNLITYRAPANTSW 305
            G V  L   + P N  W
Sbjct: 74  -GRVV-LQDIQKPENDEW 89


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/58 (41%), Positives = 34/58 (58%)
 Frame = +3

Query: 72  MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 245
           + KQI  E+ AS  YL+M A+F  D +     AK F + + EER HAT+L+    +RG
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG 73


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 86  PGGSGRVNPVLSHGGLLLDRYGEPPRLREAIL 181
           PG +G++  ++ H    +    EPP+LR   L
Sbjct: 340 PGDTGKLGRIIRHDAFQVWEGDEPPKLRYVFL 371


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
           protein 89, isoform e protein.
          Length = 5992

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 86  PGGSGRVNPVLSHGGLLLDRYGEPPRLREAIL 181
           PG +G++  ++ H    +    EPP+LR   L
Sbjct: 340 PGDTGKLGRIIRHDAFQVWEGDEPPKLRYVFL 371


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
           protein 89, isoform a protein.
          Length = 6632

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 86  PGGSGRVNPVLSHGGLLLDRYGEPPRLREAIL 181
           PG +G++  ++ H    +    EPP+LR   L
Sbjct: 340 PGDTGKLGRIIRHDAFQVWEGDEPPKLRYVFL 371


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
           protein 89, isoform g protein.
          Length = 7122

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 86  PGGSGRVNPVLSHGGLLLDRYGEPPRLREAIL 181
           PG +G++  ++ H    +    EPP+LR   L
Sbjct: 340 PGDTGKLGRIIRHDAFQVWEGDEPPKLRYVFL 371


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
           protein 89, isoform f protein.
          Length = 7441

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 86  PGGSGRVNPVLSHGGLLLDRYGEPPRLREAIL 181
           PG +G++  ++ H    +    EPP+LR   L
Sbjct: 340 PGDTGKLGRIIRHDAFQVWEGDEPPKLRYVFL 371


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
           protein 89, isoform b protein.
          Length = 8081

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 86  PGGSGRVNPVLSHGGLLLDRYGEPPRLREAIL 181
           PG +G++  ++ H    +    EPP+LR   L
Sbjct: 340 PGDTGKLGRIIRHDAFQVWEGDEPPKLRYVFL 371


>AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical
           protein Y11D7A.11 protein.
          Length = 313

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 302 RRVGGGPVRDEVGYGA 255
           + VG GPV+ + GYGA
Sbjct: 73  KAVGSGPVKRQAGYGA 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,272,958
Number of Sequences: 27780
Number of extensions: 137183
Number of successful extensions: 334
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)