Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322D12f
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   6.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 239 HEQVVNELGRVLAFFSRSIEE 177
           H Q+++ L  VLA   R ++E
Sbjct: 365 HSQLIDTLENVLAIVDRLMDE 385


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 3   FGTGSPVTIRDEWLTM 50
           +G   P ++ D WLTM
Sbjct: 342 YGRFPPQSLTDMWLTM 357


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 3   FGTGSPVTIRDEWLTM 50
           +G   P ++ D WLTM
Sbjct: 310 YGRFPPQSLTDMWLTM 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,431
Number of Sequences: 438
Number of extensions: 1689
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)