Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322D10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 35 0.008
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 34 0.015
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 31 0.079
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 31 0.10
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 30 0.24
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 28 0.73
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 25 5.2
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 6.8
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 9.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.0
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 9.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 9.0
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 25 9.0
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 505 QLMEKEGPTALYKGVTPVMIRAFPANAACFVGFEMAVK-FLDWVAP 371
Q+ EG +L++G+ P + PAN F+G+E + + DW P
Sbjct: 91 QIARHEGVRSLWRGLVPSLTMLLPANTVQFLGYEQLLPLYSDWGFP 136
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 502 LMEKEGPTALYKGVTPVMIRAFPANAACFVGFEMAVKF 389
L ++ GP AL+KG P ++ P+ A + + K+
Sbjct: 290 LWKRGGPKALWKGTLPRCVKVAPSCAIMISSYHLTKKY 327
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 33.9 bits (74), Expect = 0.015
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 517 EMSQQLMEKEGPTALYKGVTPVMIRAFPANAACFVGFE 404
+ ++ + K G Y+G PV++RA PANA F +E
Sbjct: 256 QCAKGIYTKAGLRGFYRGFVPVLVRAAPANAVTFYVYE 293
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 31.5 bits (68), Expect = 0.079
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 493 KEGPTALYKGVTPVMIRAFPANAACFVGFEMAVKF 389
+EG TALYKG P ++R P V F ++F
Sbjct: 253 EEGFTALYKGFVPKVLRLGPGGGILLVVFNSVIEF 287
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 508 QQLMEKEGPTALYKGVTPVMIRAFPANAACF 416
+++++ EGP LY+G+ P ++ P A F
Sbjct: 53 KKIVKNEGPHRLYRGILPPILMEAPKRALKF 83
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 31.1 bits (67), Expect = 0.10
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 508 QQLMEKEGPTALYKGVTPVMIRAFPANAACFVGFEMAVKFLD 383
+ +++ EGPT+ +KG+TP ++ P F + + F D
Sbjct: 255 KNMLKFEGPTSFFKGLTPKLLTTGPKLVFSFTMAQTLIPFFD 296
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 508 QQLMEKEGPTALYKGVTPVMIRAFPANAACFVGFEMAVKFLD 383
+ + EG Y G+ IR PA++ F+ FE+ K+L+
Sbjct: 330 RDIWRSEGWRKYYSGMATNFIRTIPASSVTFLSFEIVRKWLN 371
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 502 LMEKEGPTALYKGVTPVMIRAFPANAACFVGFE 404
+ EG LY+GV P+M+ P+ + FV +E
Sbjct: 61 IFHNEGIAGLYRGVGPMMLGYLPSWSIYFVVYE 93
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 293 FYYNLTPTTL-HFSIIFSYYYFTLSKVWCN 379
FY PT L H ++ Y L+++WCN
Sbjct: 212 FYNETLPTLLNHMQVLNEYRVSNLNEIWCN 241
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 290 LFYYNLTPTTLHFSII---FSYYYFTLSKVWCNPIQEL 394
+F + L+ TL+ I F Y TLSK W NP + L
Sbjct: 65 IFIFQLSILTLYICCITFRFIRYPGTLSKTWKNPSEVL 102
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 341 SYYYFTLSKVWCNPIQEL 394
+YY T S + C+PIQ+L
Sbjct: 26 NYYLLTSSPIECSPIQQL 43
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 236 SAAMYYSILNNNVCDIIGLFYYNLTPTTLHFSIIFSYYYFTLSKVWCNPIQELHSHLKTN 415
+A +Y+ N + DI+G+ YN+ P + YF+ +C Q+L +H K +
Sbjct: 656 TALGFYTAENTSDHDIVGVATYNIVPGQ-------AAVYFSKVACFCFEEQKLDAHEKVD 708
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +2
Query: 290 LFYYNLTPTT--LHFSIIFSYYYFTLSKVWCNPIQELHS-----HLKTNKTSSICWESSD 448
L +Y+ TT + SII + L + N + E+ + + +K I + D
Sbjct: 1330 LIFYHFEETTYNIKLSIINQLHAMDLLRPLLNTLVEILNLSYDRPINVDKYPKIDYNLMD 1389
Query: 449 HHRGYSFIQCSGAFLLHELLRHLS 520
+ I+C + ++ LRHLS
Sbjct: 1390 YSSATDRIRCLAIHIYYQCLRHLS 1413
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 236 SAAMYYSILNNNVCDIIGLFYYNLTPTTLHFSIIFSYYYFTLSKVWCNPIQELHSHLKTN 415
+A +Y+ N + DI+G+ YN+ P + YF+ +C Q+L +H K +
Sbjct: 656 TALGFYTAENTSDHDIVGVATYNIVPGQ-------AAVYFSKVACFCFEEQKLDAHEKVD 708
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 228 KQVLYIIYLYTHFYILYKLKETNIKII*IAKFSL 127
K ++ ++ L+TH Y YK E+ ++ I + L
Sbjct: 52 KSLVIMVLLFTHIYDCYKTNESVWNVLSIITYFL 85
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 487 GPTALYKGVTPVMIRAFPANAACFVGFEMAVKFL 386
G LY+G T + R FP FV +E + L
Sbjct: 74 GLHGLYQGHTATLYRVFPYAGIKFVAYEQVRRVL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,863
Number of Sequences: 5004
Number of extensions: 33897
Number of successful extensions: 102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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