Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322D09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    29   2.7  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   4.7  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   4.7  

>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 301 SNVLFLFLVCLRELSSFVVWFYLFSFKRCIQTINNHLVH 185
           +NV FL  +C+R L   +V F +F F   I     H++H
Sbjct: 205 ANVQFLERMCMRTLKYLIVLFVVFRFITSIILNLLHIIH 243


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 267   LKQTRNKNNTFDSWISYTTATFSH*NTAKSS 359
             L Q    N  FDSWI+Y T  ++  +T + S
Sbjct: 12767 LDQWSAPNELFDSWIAYITCDYATASTTRKS 12797


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 267   LKQTRNKNNTFDSWISYTTATFSH*NTAKSS 359
             L Q    N  FDSWI+Y T  ++  +T + S
Sbjct: 12767 LDQWSAPNELFDSWIAYITCDYATASTTRKS 12797


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,791,847
Number of Sequences: 27780
Number of extensions: 170233
Number of successful extensions: 320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)