Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322D06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    33   0.026
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   1.3  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   5.2  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   6.8  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   9.0  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 33.1 bits (72), Expect = 0.026
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 393 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNK 509
           + E+KY EAI  YT AI L   SAL   ++ R   Y+++ +
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGE 74


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 399 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPN 515
           ++ Y + ++  T A+ +NP    +  +RG  YL+L  P+
Sbjct: 54  KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPH 92


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 45  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 170
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 94  WCNSCGCVLHISTKDFNWSN 35
           WC  C C+ H    D+  SN
Sbjct: 366 WCTYCLCLAHYKLGDYEESN 385


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 49  NPLWKYVKHSRNYYTIHNWRFLRI 120
           NPL++++  + N   IH W F R+
Sbjct: 412 NPLYQWMIKAMNLRKIHVWEFSRM 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,926
Number of Sequences: 5004
Number of extensions: 30998
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)