Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322D03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 38 7e-04
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 1.3
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 1.3
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 27 2.2
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 3.9
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.2
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 6.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 6.8
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 6.8
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb... 25 6.8
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 25 9.0
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 9.0
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 9.0
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 25 9.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 38.3 bits (85), Expect = 7e-04
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 392 ESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
E+ P + + GL W+TT++++RDYF FG++L V R
Sbjct: 154 ETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMR 196
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 377 AFPRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFGDLL 502
A PR E + + + + V G+P TEE R++F+ FG +L
Sbjct: 237 AIPREE----QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 410 PRCSDLIVLGLPWKTTEEAVRDYFSSFGDLLMVQV 514
P + + V LP T + +R YF FG++L QV
Sbjct: 173 PNNTAVYVHQLPENITTQELRSYFLHFGEILYTQV 207
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 122 EEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSL 235
E + R+S ++ + P+S +P++ PTE+ GSL
Sbjct: 195 EALSSSRFSRPQVGQQQPLSSAFPFQPVKQPTEQPGSL 232
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 128 VEGQRWSVSKMTEYVPVSEGEQDEPIELPTEE 223
V Q W + E SE E+ E +E PTEE
Sbjct: 424 VSTQHWGELEEFEEEESSEEEESEDVEYPTEE 455
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 176 VSEGEQDEPIELPTEEDG 229
+ EGE+DE +ELP E G
Sbjct: 173 LEEGEEDELLELPPETSG 190
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFG 493
+IV G+ + TEE V D F+ FG
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFG 34
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 392 PRVGRHTNIGRPASPPP 342
PR R++++GR SPPP
Sbjct: 87 PRSLRYSSVGRSRSPPP 103
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 125 EVEGQRWSVSKMTEYVPVSEGEQDEPIELPTE 220
++ RW K+TE ++GE +E + LP E
Sbjct: 976 QLSANRWQPKKLTEKPAETKGEDEEAL-LPPE 1006
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
L V LP E+ +R YFS FG +L +++ R
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSR 138
>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 422 RSIVVEAAAIPRVGRHTNIGRPASP 348
+ +V+ + I ++GRHTN SP
Sbjct: 17 KKLVISPSTIYKIGRHTNKSTSPSP 41
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 113 KRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTE 220
K + ++ R V+ +++ + V EQ EPI PTE
Sbjct: 112 KDQDLLDPARSDVATVSDMMEVDTVEQSEPIAQPTE 147
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 367 ILVCLPTRGIAAASTTMLRSYSSRLTMEDDRR 462
+L+ LPTR A +L SYS +E+ +R
Sbjct: 260 VLILLPTRNSAFEFINLLISYSGTNQVENRKR 291
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
L V + + T+E V+ F FGD+ V ++R
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQR 373
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 119 DEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEEDGSLLLSTVA 253
D +EG RW+VS Y + + + + +PT E L + T+A
Sbjct: 388 DPTLEGPRWTVSDPPTYAKQTI-DSNICVLVPTAEKNKLEMRTLA 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,560
Number of Sequences: 5004
Number of extensions: 29122
Number of successful extensions: 98
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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