Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322D03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-6|CAH04715.1| 124|Caenorhabditis elegans Hypothetical pr... 48 3e-06
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 48 3e-06
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 34 0.054
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 34 0.054
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 32 0.29
U14635-5|AAN63442.1| 464|Caenorhabditis elegans Hypothetical pr... 30 0.87
U14635-4|AAL02446.1| 459|Caenorhabditis elegans Hypothetical pr... 30 0.87
U14635-3|AAN63441.1| 491|Caenorhabditis elegans Hypothetical pr... 30 0.87
U14635-2|AAC46656.2| 522|Caenorhabditis elegans Hypothetical pr... 30 0.87
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 30 0.87
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 30 0.87
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 30 0.87
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 30 1.2
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 4.7
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 4.7
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 4.7
Z66516-4|CAA91359.2| 500|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 27 6.2
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z49910-6|CAH04715.1| 124|Caenorhabditis elegans Hypothetical
protein F44G4.4b protein.
Length = 124
Score = 48.4 bits (110), Expect = 3e-06
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +2
Query: 164 EYVPVSEGEQDEPIELPTEEDGSLLLSTVAAQFAGASGLKYXXXXXXXXXXXXDE----R 331
E++ V + DEPIELPT DG +L++T+ A F GA+GLKY + +
Sbjct: 46 EFITVQDPNGDEPIELPT-VDGVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLK 104
Query: 332 LSPPAEGW 355
L PA+GW
Sbjct: 105 LIAPADGW 112
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 48.4 bits (110), Expect = 3e-06
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +2
Query: 164 EYVPVSEGEQDEPIELPTEEDGSLLLSTVAAQFAGASGLKYXXXXXXXXXXXXDE----R 331
E++ V + DEPIELPT DG +L++T+ A F GA+GLKY + +
Sbjct: 46 EFITVQDPNGDEPIELPT-VDGVVLMTTLQASFPGATGLKYKNPKTGANRAVQVDPSGLK 104
Query: 332 LSPPAEGW 355
L PA+GW
Sbjct: 105 LIAPADGW 112
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 422 DLIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
DLIVLG+ +KTT+E + YF G ++ ++KR
Sbjct: 174 DLIVLGVDFKTTDECFQKYFEDIGTVVFCEIKR 206
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.054
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
+ + GL W+TT E +RDYF FG++ V R
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMR 78
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.054
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
+ + GL W+TT E +RDYF FG++ V R
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMR 78
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 83 LTRVKAVRVDKRDEEVEGQRWSVSKMTEYVPVSEGEQDEPIELPTEED 226
LTR K+ R+ + +E ++ SK T+ VPVSE E +E +E++
Sbjct: 28 LTRRKSSRLSTQSVPIEKKKTPSSKTTKRVPVSERVFHEEVESSSEDE 75
>U14635-5|AAN63442.1| 464|Caenorhabditis elegans Hypothetical
protein C27H5.2d protein.
Length = 464
Score = 30.3 bits (65), Expect = 0.87
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 197 EPIELPTEEDGSLLLSTVAAQFAGASGLKY 286
EP+E+ +ED +L +++ F G SG+ Y
Sbjct: 17 EPVEVELDEDAGILWTSLQTAFPGCSGMYY 46
>U14635-4|AAL02446.1| 459|Caenorhabditis elegans Hypothetical
protein C27H5.2b protein.
Length = 459
Score = 30.3 bits (65), Expect = 0.87
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 197 EPIELPTEEDGSLLLSTVAAQFAGASGLKY 286
EP+E+ +ED +L +++ F G SG+ Y
Sbjct: 17 EPVEVELDEDAGILWTSLQTAFPGCSGMYY 46
>U14635-3|AAN63441.1| 491|Caenorhabditis elegans Hypothetical
protein C27H5.2c protein.
Length = 491
Score = 30.3 bits (65), Expect = 0.87
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 197 EPIELPTEEDGSLLLSTVAAQFAGASGLKY 286
EP+E+ +ED +L +++ F G SG+ Y
Sbjct: 17 EPVEVELDEDAGILWTSLQTAFPGCSGMYY 46
>U14635-2|AAC46656.2| 522|Caenorhabditis elegans Hypothetical
protein C27H5.2a protein.
Length = 522
Score = 30.3 bits (65), Expect = 0.87
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 197 EPIELPTEEDGSLLLSTVAAQFAGASGLKY 286
EP+E+ +ED +L +++ F G SG+ Y
Sbjct: 17 EPVEVELDEDAGILWTSLQTAFPGCSGMYY 46
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 30.3 bits (65), Expect = 0.87
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFGDL 499
+ V GLP+ T+++ + +YF FGD+
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDI 61
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 30.3 bits (65), Expect = 0.87
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 437 GLPWKTTEEAVRDYFSSFG 493
GLPW+ TE+ +RD+F + G
Sbjct: 11 GLPWEATEQELRDFFGNNG 29
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 30.3 bits (65), Expect = 0.87
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 437 GLPWKTTEEAVRDYFSSFG 493
GLPW+ TE+ +RD+F + G
Sbjct: 11 GLPWEATEQELRDFFGNNG 29
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 383 PRAESPPPRPRCSDLIVLGLPWKTTEEAVRDYFSSFG 493
PR + P R + V G+PW TE A++D F FG
Sbjct: 285 PRDYTSPTFSR--KIFVGGVPWDITEAALKDSFGEFG 319
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
+ V GL TT++ +R+++S FG++ + V R
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMR 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
+ V GL TT++ +R+++S FG++ + V R
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMR 56
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 425 LIVLGLPWKTTEEAVRDYFSSFGDLLMVQVKR 520
+ V GL TT++ +R+++S FG++ + V R
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMR 56
>Z66516-4|CAA91359.2| 500|Caenorhabditis elegans Hypothetical
protein W03C9.6 protein.
Length = 500
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +1
Query: 373 VCLPTRGIAAASTTMLRSYSSRLTMEDDR 459
+C G+A++S+T+LR+Y + ++ +DR
Sbjct: 147 LCYILFGVASSSSTILRAYVAAISRHEDR 175
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 474 SRTASSVVFHGKP--RTIRSEHRGRGGGDSARGKAHQYR*AGQPS 346
S T+S FHG P R GRGGG + + HQY G S
Sbjct: 383 SSTSSHRGFHGPPSHRGSYQGSSGRGGGGYHQQQHHQYNHHGASS 427
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 255 RSSQVPAA*STE*TGDYAAYASSTSACHHRRRAGRPTDIGVPSHARNRRRLDH 413
RS + + S + +GD S+ C R+ + D G+PS+AR +DH
Sbjct: 187 RSDSITSVDSGQCSGDQIERRSN---CSTRQESKDDDDTGMPSYARMASTMDH 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,733,800
Number of Sequences: 27780
Number of extensions: 183211
Number of successful extensions: 707
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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