Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322D01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 31 0.079
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 1.3
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 3.0
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 3.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 3.9
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 3.9
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 5.2
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 6.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.8
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 9.0
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 25 9.0
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.079
Identities = 22/92 (23%), Positives = 43/92 (46%)
Frame = +3
Query: 231 SIDEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENVTEKEALLNKTMG 410
SID+ NK D + +S+N++ S PS+ +F S++N LN ++
Sbjct: 133 SIDQSVLKVAATNNKDDSSAVKSANVSFPSSSTPPSSDSNF-SSIQNTD-----LNTSIK 186
Query: 411 YVEHLVDNVLNYERIKIIDGVEIKIKNDTKVV 506
+ E++ N ++ + K+I I N ++
Sbjct: 187 FTENISANAIHVNQDKVIRSANNLIINSQPIL 218
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/40 (25%), Positives = 28/40 (70%)
Frame = +3
Query: 342 LQDFIRSLENVTEKEALLNKTMGYVEHLVDNVLNYERIKI 461
L++F+ + ++V+ +++ G+++H+V +++YER K+
Sbjct: 587 LENFLVNQKDVSS--IIVSHDSGFLDHVVQAIIHYERFKL 624
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 294 ESSNINVLVSDKAP---STLQDFIRSLENVTEKEALLNKTMGYVEHLVDNVLNYERIKII 464
+++++ ++V P S L DF+ L + LLN +M + VDN+L + ++I
Sbjct: 952 DAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMI 1011
Query: 465 D 467
+
Sbjct: 1012 N 1012
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +3
Query: 225 DLSIDEETKNNTVDI--NKSDCHSTES-SNINVLVSDK---APSTLQDFIRSLENVTEK 383
D S+D KN+ V I K++ +S ES + N SD+ + Q +R LEN+ ++
Sbjct: 122 DDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQQLLRELENIKQE 180
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 315 LVSDKAPSTLQDFIRSLENVTEKEALLNKTMGYVEHLV 428
L SD+ F+R LE+V+ + LL G V HL+
Sbjct: 481 LGSDEIYKACLLFLRKLEDVSSESVLLGDICGIVLHLL 518
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +3
Query: 234 IDEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENVTE 380
+D+ +KN +V ++ HS+ S ++ +L + + ST + RS N+ +
Sbjct: 663 LDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLID 711
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Frame = +3
Query: 243 ETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENVTEKEALL----NKTMG 410
ET D N+ HST S N ++ +K T + IR T NK G
Sbjct: 49 ETIEFISDFNQKRFHSTHSGNSPSIMKNKKNVTPNNNIRQKNTATSSHPSFYIANNKQKG 108
Query: 411 YVEHL 425
Y E +
Sbjct: 109 YDEEM 113
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 231 SIDEETKNNTVDINKSDCHSTESSNI 308
SID +TKN D H + SNI
Sbjct: 27 SIDRKTKNKAYPSTTHDPHQNDDSNI 52
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +3
Query: 324 DKAPSTLQDFIRS----LENVTEKEALLNKTMGYVEHLVDNVLNYERIKIIDGVEIKIKN 491
D++ +LQ+ + S ++NV+ + ++ N + H+VDN L E + ++ V+ K+K
Sbjct: 743 DESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDN-LKSENL-LLTSVKDKLKA 800
Query: 492 D 494
D
Sbjct: 801 D 801
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +3
Query: 396 NKTMGYVEHLVDNVLNYERIKIIDGVEIKIKNDTK 500
++ M Y++ LV+N+LN +ID ++ ++++D +
Sbjct: 280 DRAMQYLKQLVENILNRSLDNLIDTLK-QVQHDAE 313
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = -2
Query: 439 NTLSTKCSTYPIVLFKRASFSVTFSKLLIKSCKVLGALSLTKTLIL 302
+ ++ T ++ F + +F+ + ++ CK +G +SL TLI+
Sbjct: 178 DNINCTVDTKLLLNFPKPAFATLPLSITVRICKFVGKVSLFTTLIV 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,659
Number of Sequences: 5004
Number of extensions: 28739
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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