Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322D01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0146 - 953957-956278,956468-956786,957185-957213                 29   2.3  
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266...    29   2.3  
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875...    29   3.0  
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    29   3.0  
10_08_0928 + 21617977-21618157,21618260-21618378,21618653-216187...    27   9.1  

>05_01_0146 - 953957-956278,956468-956786,957185-957213
          Length = 889

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 240 EETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRSLENVTEKEALLNKTMGYVE 419
           EE ++   DI + +  S E  +   L  DKA  +LQD    L+   E++  L + + Y E
Sbjct: 580 EECESKETDIVRLNKQSEEEISALQLEVDKAVESLQDAEHQLQVANEEKEKLQERLVYTE 639


>03_01_0336 -
           2659349-2659486,2659607-2659758,2660257-2660365,
           2660459-2660563,2660874-2660957,2661072-2662745
          Length = 753

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 222 QDLSIDEETKNNTVDINKSDCHSTE----SSNINVLVSDKAPSTLQDFIRSLENVTEKEA 389
           + L +D E +N TVD ++ D H  +      + N     + P    D++RS ++   KEA
Sbjct: 108 RQLGLDNERRNGTVDKSRVDAHIDDKLGSGRDRNWTGKTQEPEGSVDYLRSCKSQDSKEA 167


>04_03_0963 +
           21285160-21285579,21286585-21286635,21287017-21287502,
           21287866-21287961
          Length = 350

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 318 VSDKAPSTLQDFIRSL--ENVTEKEALLNKTMGYVEHLVDNVLNYERIK 458
           +  K  + ++ F  SL  +++T+K +++ + +GY++ L D V   E IK
Sbjct: 137 IPGKVANAIEKFYISLIYQDLTDKASIVGEAIGYIKTLEDVVQKLETIK 185


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +3

Query: 219 CQDLSIDEETKNNTVDINKSDCHSTESSNINVLVSDKAPSTLQDFIRS--LENVTEKEAL 392
           C  +  D +T N  +    +   +   S +     ++A + L  F+R   L ++     +
Sbjct: 252 CTSILCDADTDNLWLASGNAQSSAAVRSRLLAAEREEAKAVLSLFLRQKGLRSILAAR-I 310

Query: 393 LNKTMGYVEHLVDNVLNYERIKIIDGVEI 479
            NK  G++EHLV  +    R +  +G E+
Sbjct: 311 ANKADGFIEHLVSKLHITYRSRYAEGREL 339


>10_08_0928 +
           21617977-21618157,21618260-21618378,21618653-21618774,
           21618853-21619049,21619350-21619603,21619779-21619880,
           21619976-21620404,21620611-21621369,21621586-21621771
          Length = 782

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = +3

Query: 234 IDEETKNNTVDINK-SDCHSTESSN-INVLVSDKAPST---LQDFIRSLENVTEKEALLN 398
           + E T  +  D N  S C S ++    NVL+SDKAP T   LQ+ + S E++ +  + L 
Sbjct: 241 LTESTSASVGDNNSNSPCASGQTPRPSNVLISDKAPMTSSPLQELMLS-EDMDDVNSELE 299

Query: 399 KTMGYVEHL 425
           K    + H+
Sbjct: 300 KLRLELRHI 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,524,963
Number of Sequences: 37544
Number of extensions: 149632
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)