Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964     29   1.7  
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153...    28   5.2  
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783     27   9.1  

>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
          Length = 908

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 285 MKYIQIKHVKHKHKLYINNCYRLNSTITNS 196
           +K     H+KH  +L++ +CY LN+ + ++
Sbjct: 665 IKISDFNHMKHLEELHVESCYDLNTLVADT 694


>08_01_0181 +
           1530623-1531626,1531723-1531902,1531998-1532177,
           1532363-1532442,1532528-1532701,1533001-1533118,
           1533223-1533301
          Length = 604

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +3

Query: 324 ITCLEYRSFCFV*SYSIFTSSTILVRPNLHL*FNHGKQKLCKMSIKKLMIISHT 485
           I C E R F FV   S  T STIL+R N H  F  G + L K   +K   +  T
Sbjct: 405 IPCQERRMFGFVSFQSPETVSTILMRRNPH--FICGSRVLVKPYREKSKCVDRT 456


>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
          Length = 1439

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 409  RFGRTKIVEEVNIE*D*TKQKDRYSKHVIHRHNAILI 299
            R G+ KIV   N+  + TK+KD+Y +     H + L+
Sbjct: 1360 RIGQEKIVYTYNLITEGTKEKDKYDRQAKKDHMSKLL 1396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,905,689
Number of Sequences: 37544
Number of extensions: 168895
Number of successful extensions: 287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)