Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C10f
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   1.5  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   3.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   3.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   4.6  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    24   4.6  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   6.1  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +1

Query: 4   FALTTKSLRMSHNKGT 51
           F+L++KSLR+S+ KGT
Sbjct: 74  FSLSSKSLRLSNRKGT 89


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 160 STSSITVTSNKMITKKYVVYYVLSKM 237
           ST+  T+ S K  T+KY   Y LSK+
Sbjct: 49  STNVFTIQSKKFGTRKYRPTYRLSKL 74


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1274

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +2

Query: 29 ECRTT-KEHERYLHSAKKQGFQR 94
          +CR     H RYL SAKK G  R
Sbjct: 20 QCRNKYHSHVRYLSSAKKSGILR 42


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 74   WRSADNAHVPLLCDILKDLVVS 9
            WRSAD+ H+P +   L   V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 92  SGNLVSWRSADNAHVPLLC 36
           +GN V  RS +N + PLLC
Sbjct: 279 AGNFVYKRSEENVNRPLLC 297


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 146 WDGRPAHHHQAGEEDHLTSGNLVSWRSADN-AHVPL 42
           WDG  A    +   D+   GN+ + R+ +N  H P+
Sbjct: 226 WDGENAESDSSLNGDNTRGGNISTNRAFNNMGHAPI 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,735
Number of Sequences: 5004
Number of extensions: 19455
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)