Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C10f
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    28   1.8  
06_01_1160 - 9868340-9868360,9868639-9868986                           27   3.1  
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374...    27   3.1  
01_05_0168 - 18865821-18866843                                         26   5.4  
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139...    26   7.2  
12_01_0258 - 1900564-1901101,1901838-1902004                           25   9.5  
08_01_0034 - 253972-254916                                             25   9.5  
04_04_1492 - 33974804-33975040,33975121-33975214,33975351-339757...    25   9.5  
04_04_0007 + 22119477-22120004                                         25   9.5  
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           25   9.5  

>03_05_0816 +
           27928812-27930059,27931007-27931111,27931197-27931262,
           27931337-27931501,27931671-27931745,27931829-27931983,
           27932234-27932369,27932454-27932523,27932602-27932729,
           27932838-27932894,27933326-27933511,27934031-27934123,
           27934488-27934573,27934668-27934734,27934873-27934939,
           27935016-27935152,27935618-27935709,27935849-27935915,
           27936058-27936078
          Length = 1006

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 197 IILLLVTVMLDVDQHPGWDGRPAHHHQAGE 108
           +  +L+T++LDV   P W    +    AGE
Sbjct: 320 LFAVLMTMLLDVQDEPAWHAAVSEEEDAGE 349


>06_01_1160 - 9868340-9868360,9868639-9868986
          Length = 122

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 6   RANNQIFKNVAQQRNMSVICTPPRNK 83
           +A  Q+ +  A  RNM VICT P  K
Sbjct: 84  QAGRQVGRRPASIRNMRVICTTPNYK 109


>03_06_0084 +
           31536286-31536718,31536907-31536983,31537380-31537428,
           31537778-31538048,31540876-31541104,31541511-31541750
          Length = 432

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 122 HQAGEEDHLTSGNL 81
           HQ  EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365


>01_05_0168 - 18865821-18866843
          Length = 340

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 114 GLMVVGWSAIPAWVL-VNIKHYRDK 185
           G+ + GW+ +P W L + + HY  K
Sbjct: 161 GITMKGWAVVPRWKLRLRVSHYLRK 185


>01_02_0069 -
           10813467-10813475,10813476-10813564,10813865-10813988,
           10814227-10814305,10815298-10815388,10815808-10815904,
           10816197-10816241,10816369-10816464
          Length = 209

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 33  VAQQRNMSVICTPPRNKVSRGEMIFLAGL 119
           +A++  + ++C PPR     G MI   G+
Sbjct: 158 IAEKNGLQLVCPPPRLCTDNGVMIAWTGI 186


>12_01_0258 - 1900564-1901101,1901838-1902004
          Length = 234

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 146 WDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 45
           W    AH  +A E D +    +   R A   HVP
Sbjct: 28  WKAEAAHERRAAERDAMDGMGMGGTREAGADHVP 61


>08_01_0034 - 253972-254916
          Length = 314

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -1

Query: 131 AHHHQAGEEDHLTSGNLVSWRSADNAHVPLLCDILKDLVVSAK 3
           AH     E  HL  G L    S   A +  L D+  D+V   K
Sbjct: 263 AHREDMAERAHLVKGCLAMLSSGAEAVIAELDDLFDDIVEGRK 305


>04_04_1492 -
           33974804-33975040,33975121-33975214,33975351-33975754,
           33975855-33976747,33977014-33977167
          Length = 593

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 101 HLTSGNLVSWRSADNAHVP 45
           H  SG+LV+W + DNA  P
Sbjct: 82  HSVSGDLVNWAALDNALDP 100


>04_04_0007 + 22119477-22120004
          Length = 175

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 149 GWDGRPAHHHQAGEEDHLTSGN 84
           G  GRPAHHH+  +  + + G+
Sbjct: 132 GMRGRPAHHHRLMQGGYSSGGS 153


>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 42  QRNMSVICTPPRNKVSRGEMIFLAGLMV 125
           + N +++ +PP +  S  E IF+AG+ V
Sbjct: 359 ENNTTIVSSPPSSCSSLHEDIFMAGMFV 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,751,689
Number of Sequences: 37544
Number of extensions: 148816
Number of successful extensions: 329
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)