Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C10f
         (311 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    31   0.13 
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    31   0.13 
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    30   0.30 
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    26   4.8  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    26   4.8  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    26   4.8  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    26   4.8  

>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 161 DQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLCDILKDLVV 12
           DQH G  G+ + HH + E  H    +  ++R+  +  + LLC I+  LV+
Sbjct: 713 DQHRG--GKKSSHHHSRETKHRIGWSPSNYRNPRDCFLNLLCFIIAPLVI 760


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 161  DQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLCDILKDLVV 12
            DQH G  G+ + HH + E  H    +  ++R+  +  + LLC I+  LV+
Sbjct: 935  DQHRG--GKKSSHHHSRETKHRIGWSPSNYRNPRDCFLNLLCFIIAPLVI 982


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 12  NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-IFLAGLM 122
           N + F+N+ Q+    V+  PP+N  S G + +F AG+M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 148 PGCWSTSSIT-VTSNKMITKKYVVYYVL 228
           P CW  ++   VT NK+ T +Y V+Y++
Sbjct: 311 PFCWFITTFAFVTYNKVCTSQYFVWYIV 338


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 82  LFLGGVQITLMFLCCATFLKIWLLA 8
           LFL G+Q+TL+F C   FL I  LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237


>AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical
           protein B0205.13 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 155 HPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 45
           HP W+    HHHQ   + H  + N V+ ++A +  +P
Sbjct: 54  HPWWN----HHHQCWHQYHHRTENTVNSQNAPSQVIP 86


>Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical
           protein M04C9.1b protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 125 HHQAGEEDHLTSGNLVSWRSADN 57
           +HQ  E+ +L  GN VS  S DN
Sbjct: 100 YHQKDEKGYLPEGNKVSCESVDN 122


>Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical
           protein M04C9.1a protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 125 HHQAGEEDHLTSGNLVSWRSADN 57
           +HQ  E+ +L  GN VS  S DN
Sbjct: 115 YHQKDEKGYLPEGNKVSCESVDN 137


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 110 RRPDGGGLVCHPSL 151
           RRP G GL CHP L
Sbjct: 225 RRPRGFGLTCHPRL 238


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 110 RRPDGGGLVCHPSL 151
           RRP G GL CHP L
Sbjct: 225 RRPRGFGLTCHPRL 238


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 121 IRPARKIISPLETLFLGGVQITL 53
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 11  VRPSARLGAPSESLFVGGRVVTI 33


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 121 IRPARKIISPLETLFLGGVQITL 53
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 11  VRPSARLGAPSESLFVGGRVVTI 33


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 121 IRPARKIISPLETLFLGGVQITL 53
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 9   VRPSARLGAPSESLFVGGRVVTI 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,016,957
Number of Sequences: 27780
Number of extensions: 120914
Number of successful extensions: 324
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)