Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C10f
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.0  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 107 PRRPDGGGLVCHPSLGVGQ 163
           PRR +   L C P LG  Q
Sbjct: 341 PRRKNNCPLHCKPELGQSQ 359


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 WSAIPAWVLVNI 167
           W+A+PA V++ +
Sbjct: 326 WNAVPARVMIGV 337


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 WSAIPAWVLVNI 167
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 WSAIPAWVLVNI 167
           W+A+PA V++ +
Sbjct: 346 WNAVPARVMIGV 357


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 WSAIPAWVLVNI 167
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,564
Number of Sequences: 438
Number of extensions: 1298
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)