Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0674 - 5502275-5502954,5503054-5504746                           27   9.1  
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    27   9.1  
07_01_0173 - 1212858-1213805,1214982-1215642,1215699-1215724,121...    27   9.1  

>11_01_0674 - 5502275-5502954,5503054-5504746
          Length = 790

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 163 PFYFCCTECIKFGCCH-ERQTF-NC-DGFSNRS 74
           PF FC   C  FG C   R+ F +C +GFS +S
Sbjct: 324 PFSFCIATCGPFGVCDGSRKPFCDCMEGFSPKS 356


>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 238 NMCNRNKMADQNSIPTNADSTRTP 167
           N+ N+ K     S+P N+ STRTP
Sbjct: 136 NILNQTKTMIATSVPANSASTRTP 159


>07_01_0173 -
           1212858-1213805,1214982-1215642,1215699-1215724,
           1216037-1216121,1216382-1216404,1216463-1216465
          Length = 581

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 220 KMADQNSIPTNADSTRTPVPFYFCCTECIK 131
           K+  +N+I TN  S    V FY  C  C++
Sbjct: 355 KLLKENNIWTNGSSDSCVVTFYSSCRNCLE 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,104,461
Number of Sequences: 37544
Number of extensions: 227118
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)