Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    29   0.42 
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    27   2.2  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   5.2  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   5.2  

>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 298 GAPYTPTLRSVTLMPRHRNLLLSVLRNHMIEN 393
           GAPY  TL+  T +  +  L   ++ NH++ N
Sbjct: 164 GAPYGSTLKDFTFVEYNMRLRRKIIENHLLPN 195


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 202 QADLTARVSAALLLVHCATEKHAIKTKSAQDSQ*GQYNDTRFPYVV 65
           +A ++  V  A   +  +T+ H I      D+Q   Y   +FPYVV
Sbjct: 133 RAYVSYSVPIATTKIDSSTKYHEISIDDLTDAQRKLYKSKKFPYVV 178


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 295 RGAPYTPTLRSVTLMPRHRNLLLSVLRNHMIEN 393
           RG PYTP++R  +L+      LLS   NH + +
Sbjct: 112 RGGPYTPSIRDDSLL-----ALLSFSSNHRLHS 139


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 163 GAGRRTRAPSGRPGSARAPTARGPSAPA 246
           G  +    PSG   +A AP A G +APA
Sbjct: 58  GNEKLATVPSGGAAAAAAPAAAGGAAPA 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,936
Number of Sequences: 5004
Number of extensions: 32110
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)