Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322C06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1472 - 26753070-26753177,26753254-26753531,26753691-267538... 30 0.98
06_01_0499 - 3581145-3582425 30 0.98
08_02_0410 - 16842306-16842950,16844994-16845182 29 2.3
04_03_0865 + 20402711-20404057 29 2.3
08_02_0453 - 17331534-17331656,17332288-17332340,17332612-173327... 29 3.0
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 28 5.2
12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069... 27 6.9
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 27 6.9
01_06_0196 - 27410837-27413296 27 6.9
11_03_0038 - 9142692-9143083,9143665-9143686,9143763-9143806,914... 27 9.1
04_04_1083 - 30715046-30715050,30715312-30715756 27 9.1
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689... 27 9.1
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 9.1
>07_03_1472 -
26753070-26753177,26753254-26753531,26753691-26753865,
26754974-26755468
Length = 351
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -2
Query: 367 LTAINFGVEALKSPILMLACMERRXXXXXXXXXXXXXXEYQLERWGRVPWAHGLSQADLT 188
L +I+ A S ++ LA + ++Q++RWG V H + ADL
Sbjct: 276 LASIDAMAAAAHSLVIPLAIFRGKLGIEQAIELIRLEEDHQVDRWGLVEGGHDVDIADLK 335
Query: 187 ARVSAALLLV 158
++S+A++ +
Sbjct: 336 VQMSSAVVFL 345
>06_01_0499 - 3581145-3582425
Length = 426
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 105 CESWADLVLMACFSVAQCTRSRAADTRAVRSAWLSPCAHGTRPQR 239
C+SW +V CF+ Q S AA+ R + L G RPQR
Sbjct: 57 CKSWRAMVADPCFARLQLRHSTAAERRRHPPSMLVLPWWGWRPQR 101
>08_02_0410 - 16842306-16842950,16844994-16845182
Length = 277
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 151 RSVRGAGRRTRAPSGRPGSARAPTARGPSA 240
R V G GRR R G PG A A A SA
Sbjct: 140 RGVGGGGRRRRREGGEPGLAVAAAAASASA 169
>04_03_0865 + 20402711-20404057
Length = 448
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 128 FDGMFLSSAVYE-EQGGGHARRQVGLAQPVRPRHAAPAL 241
FD L+S E + G H +R VG +P P+ A PA+
Sbjct: 253 FDPELLASIERELSEEGAHIKRMVGSEKPKHPKAAPPAM 291
>08_02_0453 -
17331534-17331656,17332288-17332340,17332612-17332704,
17332747-17332903,17333246-17333384,17333467-17333529,
17337990-17338071,17338167-17338245,17338853-17339032,
17340010-17340272,17340486-17340622,17341662-17341729
Length = 478
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +1
Query: 247 DILLQVLLTIQLPRVQRGAPY----TPTLRSVTLMPRH 348
+I++ + LT+ L R+ RGAP T + + +MPRH
Sbjct: 272 NIIMDMPLTVDLTRILRGAPLIDFETESYARIGVMPRH 309
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 178 TRAPSGRPGSARAPTARGPSAPADILLQVLLTIQLPRVQRGAPYTPTLRSVTLMPRHR 351
T+ P R G A G A +L ++ + L + GA + PTLRS L + R
Sbjct: 3 TKPPQSRGGGGGGGGALGRRGFAALLAAAVIALALLCLFYGAAFAPTLRSRRLPLQRR 60
>12_02_0142 -
14306325-14306490,14306584-14306687,14306788-14306967,
14307155-14307253,14307346-14307535,14307722-14307748,
14308190-14308506,14308532-14308675,14308799-14308905,
14309085-14309357,14309470-14309827
Length = 654
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 82 AYRCIDLIVNLGQI*F*WHVSQ*RSVRGAGRRTRAPSGRPGSARAPTARGPSAPA 246
A R D+I ++ + F +++RGA PS G+A A GPS A
Sbjct: 282 AKRTCDMISDISKCAFPRLFQTHQALRGAAEAVSKPSNTEGAAEATDVDGPSKEA 336
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -1
Query: 122 ICPRFTMRSIQRYAIPVCRLVE---LYKLPFMKWIIN 21
I PRF R + IP+CRLVE K P +W+++
Sbjct: 43 IDPRFVERLREAGLIPLCRLVEDLANEKDPSRRWVVD 79
>01_06_0196 - 27410837-27413296
Length = 819
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 303 SIHANIKIGDFNASTPKFIAVSAAKSYDRKCRANTALVSV 422
SI+ + + DFNAS+P+ VSA ++ C AN +V+V
Sbjct: 414 SIYLKVPL-DFNASSPR---VSAQRAAGLACGANVTVVTV 449
>11_03_0038 -
9142692-9143083,9143665-9143686,9143763-9143806,
9143959-9144133
Length = 210
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 230 PRAVGARAEPGRPDGARVRRPAP 162
P AVG R GR DG+ RRPAP
Sbjct: 2 PWAVGDRRTSGRQDGS-YRRPAP 23
>04_04_1083 - 30715046-30715050,30715312-30715756
Length = 149
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 251 ISAGALGPRAVGARAEPGRPDGARVRRPAPRTLRY 147
+ G GPR +G R G VRR AP L +
Sbjct: 55 VEGGGFGPREMGMRRLEDAIHGVLVRRAAPEWLPF 89
>02_05_0790 -
31768131-31768269,31768343-31768503,31768845-31768973,
31769770-31769912,31770215-31770332,31771070-31771144,
31771528-31771620,31771750-31771879,31772038-31772126,
31772411-31772506,31772610-31772900
Length = 487
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 235 SAPADILLQVLLTIQLPRVQRGAPYTPTLRSVTLMPRHRNLLLSVLRNHMIENAE 399
SA A + +LL + PR G +PT R+ +L RH+ L S + +EN E
Sbjct: 4 SASASLRHHLLLR-RRPRFPLGP--SPTFRTSSLPRRHQRLFASAPSSSTVENGE 55
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 151 RSVRGAGRRTRAPSGRPGSARAP 219
RS RG+ R +R+P G P +R+P
Sbjct: 187 RSPRGSPRDSRSPRGSPRDSRSP 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,735,996
Number of Sequences: 37544
Number of extensions: 241706
Number of successful extensions: 995
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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