Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   5.2  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   6.8  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   9.0  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   9.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  

>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 185 HPLVVSVFDLLIIVGLSRSYS--YICHVPAFNT*KLALQRV 69
           H      FD+  IV L R YS  Y  H+PAF+   +A + V
Sbjct: 76  HLPYAQAFDIAEIVNLIREYSHKYHKHIPAFSAYIVAFRSV 116


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 194 YKTHPLVVSVFDLLIIVGLSRSYSY 120
           YK +PLVV ++  LI +G++  + Y
Sbjct: 74  YKNNPLVVFLYLALITIGIASFFIY 98


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 161 QTHLLPVGVFCTTWSSHHVLCSSIPVEN 244
           ++H+ P+G+    WSS      S+ V++
Sbjct: 225 ESHVAPIGIILGVWSSFTTAIESVAVKH 252


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 234 LWKMWEGGRLKALAADLSSPMVSKDWSEFRRKELVSYFN 350
           +W +  G  LK L   ++ P+ +  ++E R+  LVS  N
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLVSNLN 244


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 322 LNSDQSFETIGLLRSAASAFSLPPS 248
           +  D   + + LL   AS+FSLPPS
Sbjct: 565 MGGDAKVDRLRLLMVFASSFSLPPS 589


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 169 LTTSGCVLYYLVKPPCFMLLDTC 237
           L++  CVL    +PPC M  D C
Sbjct: 312 LSSRKCVLTDEEEPPCLMTADCC 334


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 343 YETSSLRLNSDQSFETIGLLRSAASAF 263
           YE+  L L+SD + E+  LLR   +AF
Sbjct: 302 YESEILNLSSDTNLESDFLLRQIHAAF 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,445
Number of Sequences: 5004
Number of extensions: 54981
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)