Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87...    27   9.1  
01_06_1410 + 37116414-37116695,37116796-37116902,37117148-371176...    27   9.1  

>05_01_0128 +
           866817-866859,867789-867874,868142-868231,868337-870214,
           870606-870795,870888-871483
          Length = 960

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 60  ISNNNCSRRPYHCLYHCR 7
           +S NNCSR  +HC++  R
Sbjct: 350 MSTNNCSRPQHHCMHRGR 367


>01_06_1410 +
           37116414-37116695,37116796-37116902,37117148-37117649,
           37118211-37118326,37119007-37119211
          Length = 403

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 327 KELVSYFNYTNMYTHNMYALRYAFCELLNLVNVVGQIFILDLFLGGS 467
           ++++  FNY+    H    L   F    N ++  G IF++D++ G S
Sbjct: 236 RDIICAFNYSCCCLHRRKDLVLYFRHAFNALSKRGGIFVMDVYGGTS 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,121
Number of Sequences: 37544
Number of extensions: 363444
Number of successful extensions: 928
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)