Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.47 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.47 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 188 FCTTWSSHHVLCSSIPVENV 247
           FC TW +  V+CS+  + N+
Sbjct: 97  FCDTWIAFDVMCSTASILNL 116


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 176 PVGVFC---TTWSSHHVLCSSIPVENVGRR 256
           P G  C    TW+++ V CS + VE + RR
Sbjct: 762 PAGCKCYNDRTWNTNAVDCSGLGVEEIPRR 791


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/49 (24%), Positives = 17/49 (34%)
 Frame = +3

Query: 51  CWIYGTYTLKSQLLGVEGRHMAYVGVGPAKSDDDEQIKHTYYQWVCFVL 197
           CWI   Y+L   ++   G     +G G    D D         W   V+
Sbjct: 92  CWITMVYSLLGIIIAYTGDVHGVIGAGHWIGDHDVDKDELITGWSAVVI 140


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 436 YLFWTCSLVVHSVTMV 483
           Y  W   +V+HSVT V
Sbjct: 113 YEIWVPDIVMHSVTSV 128


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 310 QSFETIGLLRSAASAFSLPPSHIFHRY 230
           QS ET+ ++ S     +LP   IF RY
Sbjct: 346 QSDETLQMIASMKIKEALPHVPIFDRY 372


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 268 AFSLPPSHIFHRYR 227
           AF +PP ++  RYR
Sbjct: 29  AFDIPPDYLPDRYR 42


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 310 QSFETIGLLRSAASAFSLPPSHIFHRY 230
           QS ET+ ++ S     +LP   IF RY
Sbjct: 346 QSDETLQMIASMKIKEALPHVPIFDRY 372


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 310 QSFETIGLLRSAASAFSLPPSHIFHRY 230
           QS ET+ ++ S     +LP   IF RY
Sbjct: 346 QSDETLQMIASMKIKEALPHVPIFDRY 372


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 306  PSKPLDC*DQLPVPSACLLPTFSTGI 229
            P KP      +P P+   +P+F  G+
Sbjct: 1128 PQKPFTSPGGIPGPNGIKMPSFMEGM 1153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,832
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)