Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C04f
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    34   0.011
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    33   0.014
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   0.23 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   0.41 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    28   0.71 
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.2  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    26   2.9  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   3.8  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   3.8  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    25   3.8  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        25   5.0  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    25   5.0  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   5.0  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    24   8.8  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    24   8.8  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 33.9 bits (74), Expect = 0.011
 Identities = 33/105 (31%), Positives = 49/105 (46%)
 Frame = +1

Query: 49  KISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQTLTLAWNNITSIYDDW 228
           K+  I  N F    S+ +LDLS N L   P   Y+ L +L +L +L LA N IT     +
Sbjct: 343 KLKSIPKNVFLSLQSLVSLDLSGNELTEIP---YA-LGELPQLCSLNLASNKITGCRTFY 398

Query: 229 RYVFVELVKLDLSGNAIGDLTDSDLHFFSEGVTVDLQHNNVSTVL 363
                 L  L LS N +  L  S L        +D++ N+++ V+
Sbjct: 399 HISLSHLQILVLSRNHLTSL--SGLENVPSLEKLDIRDNSITDVV 441


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 33.5 bits (73), Expect = 0.014
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +1

Query: 4   FSGLRNLTTVSLRNN----KISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLH 171
           F  L+ L T+SL NN         +++ FQG   I  L+LS   LA   D    P++ LH
Sbjct: 237 FKNLQFLQTLSLANNLNLYSADGYAVDVFQG---INNLNLSSTSLA---DVAELPVHTLH 290

Query: 172 KLQTLTLAWNNITSI 216
           KL  L ++ NNI  I
Sbjct: 291 KLTFLDISENNIRDI 305


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
 Frame = +1

Query: 13  LRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQTLTL 192
           +R+L  V    N++S  S+ +F    +++ LD+SYN+L    + L + L+ L  L+ L +
Sbjct: 648 IRDLNAVE---NRLS--SLTSFSNLLNLQYLDISYNQL----EDL-TGLSSLIHLRELKV 697

Query: 193 AWNNITSIYDDWRYVFVELVKLDLSGNAIGDL--TDSDLHFFSE 318
             N++ S+  D       L+KL    N I +L  T+S+LH   E
Sbjct: 698 DSNHLWSL--DGIQHLDGLLKLSACNNRIKELSFTNSNLHRLEE 739


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 25/92 (27%), Positives = 45/92 (48%)
 Frame = +1

Query: 13  LRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQTLTL 192
           L NLT + L  N      +   +  + + TL+ S+N L+     + S +  L KL+ L L
Sbjct: 524 LVNLTYLDLSYNNFVTFPLIITE-LSQLETLNFSHNLLS----QISSKIGSLVKLKHLYL 578

Query: 193 AWNNITSIYDDWRYVFVELVKLDLSGNAIGDL 288
            +N++++       +   L  +DLS NAI ++
Sbjct: 579 QFNDLSNRLPQEIGLLKNLETIDLSYNAITNI 610


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 141 VRRKRQPIVREIQRADGRGPLERVHGDDADLVVPQRDRS-QVPQPREQ 1
           V+   QP++ EI  A  R P  +  G      +PQ+ +S   P+P +Q
Sbjct: 362 VQNSAQPLLHEINFASNRNPHLKQGGAVPSSTLPQQQKSLDKPKPAQQ 409


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 332 STVTPSLKKCRSLSVRSPMAFPDRSSFTSSTNTYRQSS 219
           ST TPS     S S  S  + P  SS TSS ++   SS
Sbjct: 145 STATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSS 182


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
 Frame = +1

Query: 124 LAFAPDSLYSPLNQLHKLQTLTLAWNNITSIYDDWRYVFVELVKLDLSGNAIGDLTDSDL 303
           L FAP S  S  N ++ LQT T    NI  I      +     K  +  +A G   D   
Sbjct: 199 LEFAPQSFSSNTNSVNPLQT-TFESTNIQEISQSRTKISKPKFKFSVYSDADGSGKDGQP 257

Query: 304 HFFSEGVTVD--LQHNNVSTVLMSG 372
             +    TVD   + NN+S     G
Sbjct: 258 GTWQTLGTVDQRRKENNISATSWVG 282


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = -3

Query: 326 VTPSLKKCRSLSVRSPM-----AFPDRSSFTSSTNTYRQ 225
           V+P  K+C +    S +     +FPD ++FT +T  ++Q
Sbjct: 223 VSPDAKRCLTAGTGSDVKVWEISFPDDNNFTPTTKAFQQ 261


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 231 IRVRGTGEAGPVRERHRRPHGQR 299
           +++  + +AGPV+ R RRP  +R
Sbjct: 526 LKLSQSNKAGPVKHRKRRPKSKR 548


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 241 VELVKLDLSGNAIGDLTDSDLHFFSEGVTVDLQHNNVSTV 360
           + ++     G+AI     SD++ + EG  +D+ HN++S +
Sbjct: 99  IPIIYTPTEGDAIKQF--SDIYRYPEGCYLDIDHNDLSYI 136


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = +1

Query: 130 FAPDS-LYSPLN---QLHKLQTLT-LAWNNITSIYDDWR 231
           F+ DS + SPL+   Q   L T+  LAWNN+T+  +D R
Sbjct: 266 FSDDSNILSPLSIKVQPENLLTIARLAWNNVTAKANDTR 304


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 286 LTDSDLHFFSEGVTVDLQHNNV 351
           LTD +L+F  E +  D+Q++N+
Sbjct: 248 LTDDELNFTKEMILRDIQYHNI 269


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 101 VRMDVAPWNVFMEMTLILLFLNETVVKFLSPEN 3
           V   +APW +FM +T  + F     + F  P+N
Sbjct: 252 VTKSIAPWKLFMIITGGITFFLSIFLFFYYPDN 284


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = +1

Query: 220 DDWRYVFVELVKLDLSGNAIGDL-TDSDLHFFSEGVTVDLQHNNVSTVLMSG-VLRAANA 393
           DDW         L L    +GDL  +  L F  + +     H   + V+  G VL   N 
Sbjct: 340 DDWNISMAAATCLQLFAQVVGDLIVNPVLAFVEQNIQNPDWHQREAAVMAFGSVLEGPNV 399

Query: 394 TVL 402
            +L
Sbjct: 400 AML 402


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 422 RXGLCCSSTVALAARSTPDMRTVETLLCCRSTVT 321
           R GL CS+ +A    +  DM  + TLL  + T+T
Sbjct: 273 RSGLDCSTLLASLYSNEFDMHILPTLLKLQETMT 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,961
Number of Sequences: 5004
Number of extensions: 24915
Number of successful extensions: 91
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)