Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322C04f
(436 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 53 2e-09
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 28 0.052
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 3.4
S76956-1|AAB33931.1| 168|Apis mellifera olfactory receptor prot... 21 4.5
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 4.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 4.5
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 21 6.0
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 52.8 bits (121), Expect = 2e-09
Identities = 40/120 (33%), Positives = 58/120 (48%)
Frame = +1
Query: 1 LFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQ 180
LF+GL L ++L N I+ I F+ + ++ LDLS N L PD+ L L L+
Sbjct: 402 LFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDA----LRDLALLK 457
Query: 181 TLTLAWNNITSIYDDWRYVFVELVKLDLSGNAIGDLTDSDLHFFSEGVTVDLQHNNVSTV 360
TL L N I++ Y+ +L L L GN IG+L+ L ++L N V V
Sbjct: 458 TLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHV 517
Score = 51.2 bits (117), Expect = 5e-09
Identities = 42/118 (35%), Positives = 58/118 (49%)
Frame = +1
Query: 1 LFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQ 180
+F L L + LRNN I I N F ++ TL+LS N+L L+ N L L
Sbjct: 354 MFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLF---NGLFVLN 410
Query: 181 TLTLAWNNITSIYDDWRYVFVELVKLDLSGNAIGDLTDSDLHFFSEGVTVDLQHNNVS 354
LTL+ N I SI +L +LDLSGN + + D+ L + T+DL N +S
Sbjct: 411 RLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDA-LRDLALLKTLDLGENRIS 467
Score = 44.4 bits (100), Expect = 6e-07
Identities = 27/90 (30%), Positives = 46/90 (51%)
Frame = +1
Query: 13 LRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQTLTL 192
LR L + L+ N I I+ + G T +RT + SYN L P+ L++ L ++ L
Sbjct: 236 LRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIH---L 292
Query: 193 AWNNITSIYDDWRYVFVELVKLDLSGNAIG 282
A+N + + +L+ L+L+GN +G
Sbjct: 293 AYNGLRDLPKGIFTRLEQLLVLNLAGNRLG 322
Score = 41.5 bits (93), Expect = 4e-06
Identities = 33/119 (27%), Positives = 54/119 (45%)
Frame = +1
Query: 4 FSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQT 183
F GL L ++L N ++ I F+ ++ LDL N + + + PL LH T
Sbjct: 331 FLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLH---T 387
Query: 184 LTLAWNNITSIYDDWRYVFVELVKLDLSGNAIGDLTDSDLHFFSEGVTVDLQHNNVSTV 360
L L+ N + ++ L +L LSGNAI + S+ +DL N +++V
Sbjct: 388 LELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSV 446
Score = 37.5 bits (83), Expect = 6e-05
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 4 FSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQT 183
F+GL NL + L +N+I + F+ + +R L L N + F + + P L L+
Sbjct: 838 FNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLP---LRSLEI 894
Query: 184 LTLAWNNITSIYDDWRYVF-VELVKLDLSGN 273
L L+ N + + + W+ LV+L L N
Sbjct: 895 LRLSGNRLVT-FPVWQVTLNARLVELSLGSN 924
Score = 30.7 bits (66), Expect = 0.007
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 4 FSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRL 126
F GLR L T+ + + + + +N+ +++TL+L+ NRL
Sbjct: 143 FLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRL 183
Score = 28.7 bits (61), Expect = 0.030
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +1
Query: 1 LFSGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSYNRLAFAPDSLYSPLNQLHKLQ 180
+F G +N+ + + + I I TF G +++ L L NR+ + L+ L +L
Sbjct: 813 VFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLREL- 871
Query: 181 TLTLAWNNITSIYDDWRYVFVELVK-LDLSGNAI 279
NN+ + ++ + ++ L LSGN +
Sbjct: 872 ---YLQNNLIGFIGNLTFLPLRSLEILRLSGNRL 902
Score = 22.2 bits (45), Expect = 2.6
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +1
Query: 37 LRNNKISVISMNTFQGATSIRTLDLSYNRL 126
+ NN I+++ NTF ++ +D+ N +
Sbjct: 624 INNNYINLVRPNTFTDKVNLTRVDMYANMI 653
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 27.9 bits (59), Expect = 0.052
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 405 QQHGGVGSAEHAGHEDR-GDVVVLQVHRHPLAKEVQVAVREVADGVPGQVQLH 250
QQH S+EHA +++R G L+ H+H A+ + + + + Q+QL+
Sbjct: 104 QQHHQDSSSEHASNQERFGYFSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLN 156
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 145 LYSPLNQLHKLQTLTLAWNNITSIYDDWRYVFVELVKLDL 264
+Y + + + T + T + +DW+YV + L +L L
Sbjct: 479 IYKAIEGIRFIADHTKREEDSTRVKEDWKYVAMVLDRLFL 518
>S76956-1|AAB33931.1| 168|Apis mellifera olfactory receptor
protein.
Length = 168
Score = 21.4 bits (43), Expect = 4.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 7 SGLRNLTTVSLRNNKISVISMNTFQGATSIRTLDLSY 117
S L +L R NK++V + G S+ T+ +SY
Sbjct: 61 SPLLSLVCADTRLNKLAVFIVAGAVGVFSVLTILISY 97
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 4.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 208 TSIYDDWRYVFVELVKLDL 264
T + +DW+YV + L +L L
Sbjct: 505 TKVKEDWKYVAMVLDRLFL 523
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 4.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 208 TSIYDDWRYVFVELVKLDL 264
T + +DW+YV + L +L L
Sbjct: 505 TKVKEDWKYVAMVLDRLFL 523
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 21.0 bits (42), Expect = 6.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 123 PIVREIQRADGRG 85
P R ++R+DGRG
Sbjct: 1 PRTRRVKRSDGRG 13
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,646
Number of Sequences: 438
Number of extensions: 1906
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -