Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322C03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 27 1.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 1.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 1.7
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 5.2
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 5.2
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 6.8
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 6.8
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 6.8
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.8
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 25 9.0
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 408 CTCSADGKSVFC 443
CTCS DGK FC
Sbjct: 17 CTCSCDGKLAFC 28
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 1.7
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 43 KP-SKPASPDKNSGWTAISVSAIRKAKTSPALVWIATLSTVTTMLSPSTATELKEK*VRS 219
KP S PA+ K + A VS ++ + P + T +P T+T K +
Sbjct: 998 KPVSMPAAKSKPAPM-ANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATT 1056
Query: 220 QPRAFPAPSTI-RAATYAAVLTRADTPLA 303
+ PAPST+ AA+ + +++ P+A
Sbjct: 1057 VSASKPAPSTVTSAASSPSNISKPSAPVA 1085
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 60 QPGQEFRLDCNKCLCDKEGKDFSCTRMDCNALNSNHNAEPFNGDRTKR 203
Q + L+ N +G+ S T D ++L ++ +PFNG++ +R
Sbjct: 1521 QVSDSYVLNKNSKNKSNKGRSASYTFSDPSSLEDSNRQKPFNGEKFRR 1568
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = -3
Query: 366 ENLDPGRAHASPPSP-GGIASRCKWRVGP 283
+NL P AH P S G + C W P
Sbjct: 752 QNLQPSTAHVDPESDLGRVIKICDWYQSP 780
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 153 LNSNHNAEPFNGDRTKRE 206
LNSN A +GDRT+RE
Sbjct: 451 LNSNFPATSIHGDRTQRE 468
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 37 NRKPSKPASPDKNSGWTAISVSAIRKAKTSP-ALVWIATLSTVTTMLSPSTA 189
N K S P + N W S +RK T P ++ A LST +L T+
Sbjct: 280 NYKSSVPFEVELNDDWKFFIESTVRKYLTDPVSMPNFALLSTGAEVLPALTS 331
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 130 QEKSLPSLSQRHLLQSNRNSCPGWQVLTVSC 38
QE+ + SLS + L SNR W+ +V C
Sbjct: 69 QERGVFSLSSKSLRLSNRKGTIRWRYHSVPC 99
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 152 SVAIHTSAGEVFAFLIAETLIAVQPEFLSGLAG--FDGFLLGRTNFSRQGV 6
SV I +A + ++A + V G AG F GFL T FSR+G+
Sbjct: 207 SVRIFETAVALLVLVVAISFAVVLGRVHIGGAGTVFKGFLPSSTVFSREGL 257
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 46 PSKPASPDKNSGWTAISVS-AIRKAKTSPALVWIATLSTVTTMLSPSTATELKEK*VRSQ 222
P+ PASP + W A VS + S +++ LS TA S
Sbjct: 62 PTPPASPPGSPYWEAKPVSHTVFLESPSDVFTLEKPIASTHRWLSKLTALSKSTNSTLST 121
Query: 223 PRAFPAPSTIRAATYAAVLTRA 288
P++F +P R + ++ + A
Sbjct: 122 PKSFHSPLQSRGISPSSAQSSA 143
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 215 LTYFSFSSVAVEGLSIV 165
+T F FSSVAV G++I+
Sbjct: 454 MTTFLFSSVAVSGIAII 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,459
Number of Sequences: 5004
Number of extensions: 40577
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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