Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322C03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 31 0.74
03_01_0296 + 2284385-2285629,2287632-2288594 30 0.98
03_01_0103 + 829110-829302,829535-829938 29 1.7
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 29 2.3
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 2.3
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 29 3.0
01_06_1454 + 37498513-37499154 29 3.0
09_06_0231 + 21733151-21734905 28 5.2
07_03_1310 - 25673140-25673418,25673837-25674082,25674189-256744... 28 5.2
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749... 28 5.2
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 6.9
10_08_0233 - 16061182-16061714,16062765-16063578 27 6.9
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 27 6.9
01_06_0922 - 33022709-33023545 27 6.9
01_01_0179 + 1517379-1517721,1518092-1518376,1519462-1519699,151... 27 6.9
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216 27 9.1
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627... 27 9.1
01_07_0364 - 43068466-43068561,43068676-43068747 27 9.1
01_05_0242 + 19828521-19829252 27 9.1
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 27 9.1
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 30.7 bits (66), Expect = 0.74
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -1
Query: 281 VSTAAYVAALIVDGAGNARGWLLTYFSFSSVAVEGLSIVVTVESVA 144
V AAY+A +V AR LT F +VA L +VVTV +VA
Sbjct: 519 VVEAAYIAVYLVYAPRPARLRALTSFLLLNVAAFSLVVVVTVAAVA 564
>03_01_0296 + 2284385-2285629,2287632-2288594
Length = 735
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 220 GF*LTSLLVLSPLKGSALWLLLRALQSIRVQEKSLPSL 107
GF + S+++ + G +LW++ A+ R+ KS P+L
Sbjct: 342 GFPVVSVVLFAATLGVSLWIISSAIHHYRIPRKSTPNL 379
>03_01_0103 + 829110-829302,829535-829938
Length = 198
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 308 QGASGVSALVSTAAYVAALIVDGAGNA 228
+GAS +++LV+ AA L++DG G A
Sbjct: 2 RGASALASLVAAAAVALLLLIDGCGGA 28
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 29.1 bits (62), Expect = 2.3
Identities = 29/91 (31%), Positives = 40/91 (43%)
Frame = +1
Query: 34 PNRKPSKPASPDKNSGWTAISVSAIRKAKTSPALVWIATLSTVTTMLSPSTATELKEK*V 213
P R S P+SPD+ G A + +A A SP V+ +LS ST+
Sbjct: 118 PRRARSVPSSPDRKFGAAAAAPAA---ASGSPD-VYRPSLSAA----GRSTSARSVSGSS 169
Query: 214 RSQPRAFPAPSTIRAATYAAVLTRADTPLAP 306
R+QP FP P+ R + A A +P P
Sbjct: 170 RTQP--FPKPTLARVKSERATTAAAASPRPP 198
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 160 VTTMLSPSTATELKEK*VRSQPRAFPAPS 246
++T LSP T ++ K R +PR +PAPS
Sbjct: 323 LSTALSPIALTCMEPKKKRGRPRKYPAPS 351
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 351 GRAHASPPSPGGIASRCKWRVGPRQYSGIRCS 256
GR HASP SP G A R + V + SG +CS
Sbjct: 520 GRWHASP-SPEGFAGRGEREVARQGTSGSKCS 550
>01_06_1454 + 37498513-37499154
Length = 213
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 358 GSWSCA-CVSSFSWGHRIKVQVAC 290
GS CA C+S F+ GHR++V C
Sbjct: 141 GSTECAICLSEFAQGHRVRVLPRC 164
>09_06_0231 + 21733151-21734905
Length = 584
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 171 AEPFNGDRTKREVSQKPATCV--PGSVYNQGCNVCRCTDEGRHATCTLMRCPQEKEETHA 344
A+ + R R ++ +C+ P V GC VC C + R P+EK++
Sbjct: 28 ADQDDAKRPGRRRRRRRRSCLRLPLGVGAGGCRVCACDEMDPATAAPRRRAPEEKDDDEE 87
Query: 345 HDQ 353
++
Sbjct: 88 EEE 90
>07_03_1310 -
25673140-25673418,25673837-25674082,25674189-25674465,
25675474-25675751,25675845-25676378
Length = 537
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 478 WGVMSWSQRRSVQKTLFPSAEQVQSLQSRVNCSP 377
W V SW ++++Q +PS E++ S+ + P
Sbjct: 78 WTVDSWKAKKALQLPEYPSQEELDSVLKTIETFP 111
>05_04_0268 -
19574540-19574582,19574664-19574755,19574843-19574920,
19575095-19575232,19575478-19575606,19575889-19576018,
19576171-19576348,19576715-19576853,19577031-19577120,
19577260-19577421,19577556-19577720,19577909-19578046,
19578657-19578836,19579129-19579257,19579442-19579677,
19579795-19579957,19580030-19580070,19580162-19580489,
19581416-19581553,19581670-19581873
Length = 966
Score = 27.9 bits (59), Expect = 5.2
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = -1
Query: 314 SHQGASGVSALVSTAAYVAALIVDGAGNARGWLLTYFS-FSSVAVEGLSIVVTVESVAIH 138
S + G+ A V + A ARGW S SSV V S +V +E A+H
Sbjct: 525 SPEDVGGMHAAVGILTARGGMTSHAAVVARGWGKCCVSGCSSVRVNDASKIVVIEDKALH 584
Query: 137 TSAGEVFAFLIAETLIAVQPEFLSGLAG 54
E +I QP L+G
Sbjct: 585 EGEWLSLNGSTGEVIIGKQPLCPPALSG 612
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -1
Query: 203 SFSSVAVEGLSIVVTVESVAIHTSAGEVFAFLIAETLIAVQPEFLSGLAGFDGFLLGRTN 24
SF + ++G ++ VE + IH + + L+AE + ++P + A DG +
Sbjct: 816 SFCNRHMDGSTMGTAVEYI-IHEETVDCYTELVAEMKLDLEPTHIIVSASRDGLIFNPAM 874
Query: 23 FSRQGV 6
FS +
Sbjct: 875 FSNSDI 880
>10_08_0233 - 16061182-16061714,16062765-16063578
Length = 448
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 354 PGRAHASPPSPGGIASRCKW 295
P AHA+ P+P A RC+W
Sbjct: 42 PSVAHANLPTPSVTAFRCRW 61
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 189 DRTKREVSQKPATCVPGSVYNQGCNVCRCTDEGRHATCTLMRCPQEKEETHA-HDQDPGF 365
++T + +++ A PG+ GC++C + G T ++ + + T A +Q+
Sbjct: 143 EKTTKAMARTTAKPSPGAAARWGCSICNISCNGECDFDTHLKGKKHQANTQALLEQNKKS 202
Query: 366 RCNPGEQFTR 395
NP Q T+
Sbjct: 203 SVNPESQGTK 212
>01_06_0922 - 33022709-33023545
Length = 278
Score = 27.5 bits (58), Expect = 6.9
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Frame = +1
Query: 34 PNRKPSKPASPDKNSGWTAISVSAIRKAKTSPALVWIATLSTVTTMLSPSTATELKEK*V 213
P R P KPA + + AI + + A + + SP E +++ V
Sbjct: 120 PERSPGKPARRKRPVSVSGELAHAISRRDRAAAAAYGVRSRSARASASPPPRREQRDRSV 179
Query: 214 R--SQPRAFPAPSTIRAATYAAVLTR-ADTPLAP 306
R P A P RAA+ A L R P+ P
Sbjct: 180 RRSPSPAAKRTPEQRRAASPAPSLQRKPPVPVRP 213
>01_01_0179 +
1517379-1517721,1518092-1518376,1519462-1519699,
1519796-1519946,1520049-1520446,1520552-1520573
Length = 478
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 43 KPSKPASPDKNSGWTAISVSAIRKAKTSPALVWIATLSTVTTMLSPSTA 189
KP KPA + W + + +A A T+ + T T+TT S S A
Sbjct: 402 KPGKPAIHGRVGRWMSTTTTASSAASTANTATTLGT-DTMTTRASASAA 449
>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
Length = 750
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 220 GF*LTSLLVLSPLKGSALWLLLRALQSIRVQEKSLPSL 107
GF + S+++ + G ++W+++ A+ RV S P+L
Sbjct: 362 GFPVVSVVLFAATLGVSIWIIVSAILHYRVPRGSSPNL 399
>02_05_1314 -
35661824-35661912,35662031-35662454,35662689-35662787,
35662886-35662995,35663263-35663516,35664080-35664098,
35664834-35665075,35665662-35666401
Length = 658
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 61 SPDKNSGWTAISVSAIRKAKTSPALVWIATLSTVTTMLS 177
S D + A + + T ALVW+A +++V ++S
Sbjct: 609 SRDGENAAAAADTGTVSNSSTDTALVWLAAITSVMVLVS 647
>01_07_0364 - 43068466-43068561,43068676-43068747
Length = 55
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 502 VLAYAAFMWGVMSWSQRRSVQKTLFPS 422
+L +AA + G M W QR+ K FPS
Sbjct: 16 LLVWAAALQGHMMWMQRQDAFKQKFPS 42
>01_05_0242 + 19828521-19829252
Length = 243
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 318 GIASRCKWRVGPRQYSGIRCSPDCRRSRER 229
G R KW G R+ S R +C RSRER
Sbjct: 192 GARERAKWTKGRRRASFYRARTEC-RSRER 220
>01_05_0117 -
18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/84 (26%), Positives = 32/84 (38%)
Frame = -1
Query: 380 AGVATKTWIXXXXXXXXXXLGASHQGASGVSALVSTAAYVAALIVDGAGNARGWLLTYFS 201
AGV TW+ G + S +VST ++ V G + R L
Sbjct: 180 AGVILVTWLVWKERNARIFDGKAASAEQATSPMVSTNEHLVG--VTGDDHERFLLRIKNR 237
Query: 200 FSSVAVEGLSIVVTVESVAIHTSA 129
F V +E +I V E +A+ A
Sbjct: 238 FDRVGLELPTIEVRAEGLAVEAEA 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,681,086
Number of Sequences: 37544
Number of extensions: 340813
Number of successful extensions: 1430
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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