Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322C03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   4.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   4.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   5.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 297 TCTLMRCPQEKEETHAHDQDPGFRCNPGEQFTRDCNDC 410
           TC  + C Q +E  + HD+     C PG+    D   C
Sbjct: 465 TCCWV-CDQCEEYEYVHDEYTCMDCGPGKWPHEDKRGC 501


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 393 RDCNDCTCSADGKSVFC 443
           R CND +   DG  + C
Sbjct: 101 RQCNDTSIGVDGCDLMC 117


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 209 YFSFSSVAVEGLSIVVTVESVAIH 138
           Y  F+ + V GLS+V+T+  + +H
Sbjct: 301 YLLFTMILV-GLSVVITIVILNVH 323


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 393 RDCNDCTCSADGKSVFC 443
           R CND +   DG  + C
Sbjct: 102 RQCNDTSIGVDGCDLMC 118


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 357 PGFRCNPGEQF 389
           P FRC P ++F
Sbjct: 419 PAFRCKPSQRF 429


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 49  TVSCWDARTFLDR 11
           T+SCW+    LDR
Sbjct: 324 TLSCWNEHQSLDR 336


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 293 VSALVSTAAYVAALIVDGAGNAR 225
           V ALVS   Y+A +I+  AG  R
Sbjct: 407 VIALVSIIMYIAFIILQYAGLLR 429


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 109 LSQRHLLQSNRNSCPGWQVLTVSCWDARTFLD 14
           LS  H++  +  +    Q+LT +CW  + + D
Sbjct: 37  LSLHHIIDVDEKN----QILTTNCWVTQIWTD 64


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 297 TCTLMRCPQEKEETHAHDQDPGFRCNPGEQFTRDCNDC 410
           TC  + C Q +E  + +D+     C PG+    D   C
Sbjct: 555 TCCWV-CDQCEEYEYVYDEYTCMDCGPGKWPHEDKRGC 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,750
Number of Sequences: 438
Number of extensions: 3266
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)