Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    27   1.7  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    27   2.2  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   3.0  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   6.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   6.8  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   9.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.0  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.0  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   9.0  

>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 422 SYKYLPLAGFEPATPVYSDHVT 487
           S  Y+  A FEP  P+Y  HV+
Sbjct: 75  SESYINDASFEPTVPIYESHVS 96


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 416 YLSYKYLPLAGFEPATPVYSDHVTYH*TRRP 508
           Y +Y Y P   F P  P+Y+D + Y+    P
Sbjct: 454 YYNYNY-PQPSFPPFHPIYNDSIGYYSQANP 483


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 474 LYTGVAGSNPAKGRYLYDKYXCLFQGYGCILNICMC 367
           L++ +   NPA  ++L      L  G+ C+L   MC
Sbjct: 46  LFSRIMKFNPAHPKWLNRDRFILSNGHACVLQYIMC 81


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 234 TIASVGDFCTDGHNYCVICVLQTAGP 157
           TI  +GD CT G  +C +   +  GP
Sbjct: 123 TIMLMGDTCTRGCRFCSVKTSRRPGP 148


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = -1

Query: 332  VLVTQVLY--QIITGLVNVA*LLVNIYLFLLSPYSL 231
            +L+T++L   +++  L +V   + N++LFLLS YSL
Sbjct: 1050 ILLTEILRTGKMLPRLNDVEYYINNVFLFLLSFYSL 1085


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 393 GCILNICMCIIKILHLFPLSGTCNTSSLPNYHG 295
           G + N+      IL  F L   CN  + PNY G
Sbjct: 110 GFVSNVSAVAAFILWDFVLRKPCNNRTFPNYMG 142


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 148 NSSRTSRLKNTNNTIIVAVSAKVTYACY 231
           +SS TS L N+N  I + +S   TY  Y
Sbjct: 649 SSSYTSALLNSNVFINIVISLSSTYGMY 676


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 234 TIASVGDFCTDGHNYCV-ICVLQTAG 160
           T+ S+ D C   H YC+  C+   +G
Sbjct: 749 TLTSISDQCISSHKYCMDACLSYLSG 774


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 212 FALTATIIVLFVFFKRLVRDEL 147
           FALT  II+LF F   ++ D+L
Sbjct: 394 FALTLAIIILFAFNDLVIFDKL 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,670
Number of Sequences: 5004
Number of extensions: 40233
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)