Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    29   0.32 
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   2.2  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   5.2  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   6.8  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   6.8  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 462 KGENEHINLKVLGQDN 509
           K   EHINLKV+GQDN
Sbjct: 30  KPSTEHINLKVVGQDN 45


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/26 (61%), Positives = 16/26 (61%)
 Frame = -3

Query: 339 PNSARGPPNLSILVSGGKETNQDFLS 262
           PN AR P  LS LV G KET  D LS
Sbjct: 899 PNRARDPGTLSHLVKGLKET-ADHLS 923


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 406 SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKITQLY 519
           +F+   +  +LIS +L+K  EK+N L  K+ V I  LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 99  ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 206
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 397 SIHSFVLIVSRTTLISKWLMKRREKTNTL 483
           +++ FV++V    L S W+M +  KT  L
Sbjct: 496 AVYIFVIVVMTLPLSSLWIMYQHSKTPNL 524


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 358 YAFVCENRYQISLSIHSFVLIVSRTTLISKWLMKRREKTN 477
           Y F   N +Q +LSI      +++ T I +W MK+  + N
Sbjct: 193 YRFNQRNNFQ-TLSIDEAEAKMNKKTPIPRWFMKKESEEN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,277
Number of Sequences: 5004
Number of extensions: 40871
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)